WormBase Tree Display for Variation: WBVar00270773

WBVar00270773 Evidence: Paper_evidence: WBPaper00005369
  Name: Public_name: WBVar00270773
    Other_name: uCE4-1153
      CE44609:p.Ala73LeufsTer4
      K01A6.2e.1:c.217del
      K01A6.2d.1:c.180-131del
      K01A6.2c.1:c.936-131del
      K01A6.2a.1:c.936-131del
      K01A6.2b.1:c.339-131del
    HGVSg: CHROMOSOME_IV:g.11724825del
  Sequence_details: SMap: S_parent: Sequence: K01A6
    Flanking_sequences: AACACAGACAACGTTTGATGGTGGAAGTAATAGGCACAAGGGTTTTGTTTCGTTTCGATCACAAGATGAAGATCAGAATGAAGATGATTGTGAAGAAGGG CTCTTTTGTTGAAAGCTGTTCAGCATACATCATCGGCAAAAAAGTATGACCACTGATACAAAACCTAGACAACTAATTTAGAAATTTTCATTAAGGACAA
    Mapping_target: K01A6
    Type_of_mutation: Deletion: G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Swan
    Analysis: SNP_Swan
    Status: Live
  Affects: Gene: WBGene00010444
    Transcript: K01A6.2e.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: K01A6.2e.1:c.217del
        HGVSp: CE44609:p.Ala73LeufsTer4
        cDNA_position: 217
        CDS_position: 217
        Protein_position: 73
        Exon_number: 1/8
        Codon_change: Gct/ct
        Amino_acid_change: A/X
      K01A6.2a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: K01A6.2a.1:c.936-131del
        Intron_number: 9/15
      K01A6.2c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: K01A6.2c.1:c.936-131del
        Intron_number: 9/16
      K01A6.2d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: K01A6.2d.1:c.180-131del
        Intron_number: 3/9
      K01A6.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: K01A6.2b.1:c.339-131del
        Intron_number: 4/10
  Reference: WBPaper00005369
  Method: SNP_Swan