WormBase Tree Display for Variation: WBVar00270218
expand all nodes | collapse all nodes | view schema
WBVar00270218 | Evidence | Paper_evidence | WBPaper00005369 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00270218 | |||
Other_name | uCE4-501 | ||||
B0545.1a.1:c.279+1634del | |||||
B0545.1b.2:c.-133+1634del | |||||
B0545.1b.1:c.-133+1634del | |||||
HGVSg | CHROMOSOME_IV:g.95464del | ||||
Sequence_details | SMap | S_parent | Sequence | B0545 | |
Flanking_sequences | AACGATATTTATGAGGCTATTAGTCTTCTAATTAAGGTAAGAAATTCGGATTGTTTGCCACGCACATTTTGTGGGCGGAGCTTATCACAGCTTTTGATTT | CAAAATGGTTTTCTGGCAGCATTAAGAAAATTTCAGAGTGGTCAGAAGTTAAAAAATTTTTTGTAAGTTCTATAGAACGGTTTAGAAAATTCCAAAAAAA | |||
Mapping_target | B0545 | ||||
Type_of_mutation | Deletion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
Analysis | SNP_Swan | ||||
Status | Live | ||||
Affects | Gene | WBGene00006599 | |||
Transcript | B0545.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | B0545.1b.1:c.-133+1634del | ||||
Intron_number | 4/13 | ||||
B0545.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0545.1a.1:c.279+1634del | ||||
Intron_number | 4/12 | ||||
B0545.1b.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | B0545.1b.2:c.-133+1634del | ||||
Intron_number | 2/10 | ||||
Reference | WBPaper00005369 | ||||
Method | SNP_Swan |