WormBase Tree Display for Variation: WBVar00270043
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| WBVar00270043 | Evidence | Paper_evidence | WBPaper00005369 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00270043 | |||
| Other_name | uCE3-1229 | ||||
| cewivar00332901 | |||||
| T28D6.5b.1:c.291+619C>T | |||||
| T28D6.5d.1:c.357+619C>T | |||||
| T28D6.5f.1:c.357+619C>T | |||||
| T28D6.5e.1:c.357+619C>T | |||||
| T28D6.5g.1:c.357+619C>T | |||||
| T28D6.6a.1:c.206-5173G>A | |||||
| T28D6.5a.1:c.291+619C>T | |||||
| T28D6.5c.1:c.291+619C>T | |||||
| HGVSg | CHROMOSOME_III:g.11336285C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | T28D6 | |
| Flanking_sequences | GGCGTCAGCTTCAATGTGAAGCTGTGAAAAAAAGATGGAGAAGGCCAAAAACGAAGTCTCTCACTCTCTCTCTCTATTCACATGTGTGTGCGCACACATA | ATAAATACACACAAAAAAAAACCGCCGACGCCGACAACTTTTGCAACGACGAGCTCCGCGCGCCGGCGTAGGCGCCACGAAGACTAAAGCCGCCACCCGC | |||
| Mapping_target | T28D6 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Swan | ||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| Analysis | SNP_Swan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012126 | |||
| WBGene00012125 | |||||
| Transcript | T28D6.6a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.6a.1:c.206-5173G>A | ||||
| Intron_number | 4/10 | ||||
| T28D6.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5c.1:c.291+619C>T | ||||
| Intron_number | 2/11 | ||||
| T28D6.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5a.1:c.291+619C>T | ||||
| Intron_number | 2/11 | ||||
| T28D6.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5b.1:c.291+619C>T | ||||
| Intron_number | 2/12 | ||||
| T28D6.5e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5e.1:c.357+619C>T | ||||
| Intron_number | 2/10 | ||||
| T28D6.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5d.1:c.357+619C>T | ||||
| Intron_number | 2/10 | ||||
| T28D6.5f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5f.1:c.357+619C>T | ||||
| Intron_number | 3/13 | ||||
| T28D6.5g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5g.1:c.357+619C>T | ||||
| Intron_number | 3/12 | ||||
| Reference | WBPaper00005369 | ||||
| Method | SNP_Swan |
