WormBase Tree Display for Variation: WBVar00269602
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WBVar00269602 | Name | Public_name | WBVar00269602 | ||
---|---|---|---|---|---|
Other_name | uCE3-742 | ||||
haw141177 | |||||
cewivar00148529 | |||||
CE33935:p.Ser261= | |||||
R155.1b.2:c.783C>A | |||||
CE32713:p.Ser393= | |||||
R155.1a.1:c.1179C>A | |||||
R155.1b.1:c.783C>A | |||||
HGVSg | CHROMOSOME_III:g.1953635G>T | ||||
Sequence_details | SMap | S_parent | Sequence | R155 | |
Flanking_sequences | CCCCAATCCAATATTTAGTCTTAATTAGTCCAAACATAAGGAAAGCGAATCCCATCGAGTAGGAAATTGTGAGTTTTCCAAAAATCCAGATAAACGGCCT | GAAATAGGCTTAGAAATGGCCTCAGACCATCCGGGAGTCCTCTTAATCAGAGCATAAAGCTGATTTTGAGCCTGAACACATCCGAGTTCAACGCCGAAAA | |||
Mapping_target | R155 | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | SNP_Swan | |||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | SNP_Swan | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00561042 | |||
Status | Live | ||||
Affects | Gene | WBGene00020115 | |||
Transcript | R155.1b.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | R155.1b.1:c.783C>A | ||||
HGVSp | CE33935:p.Ser261= | ||||
cDNA_position | 1107 | ||||
CDS_position | 783 | ||||
Protein_position | 261 | ||||
Exon_number | 7/9 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
R155.1b.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | R155.1b.2:c.783C>A | ||||
HGVSp | CE33935:p.Ser261= | ||||
cDNA_position | 802 | ||||
CDS_position | 783 | ||||
Protein_position | 261 | ||||
Exon_number | 6/8 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
R155.1a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | R155.1a.1:c.1179C>A | ||||
HGVSp | CE32713:p.Ser393= | ||||
cDNA_position | 1207 | ||||
CDS_position | 1179 | ||||
Protein_position | 393 | ||||
Exon_number | 8/10 | ||||
Codon_change | tcC/tcA | ||||
Amino_acid_change | S | ||||
Reference | WBPaper00038208 | ||||
WBPaper00005369 | |||||
Method | SNP_Swan |