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WormBase Tree Display for Variation: WBVar00252656

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Name Class

WBVar00252656NamePublic_nametm4115
Other_nameCE04980:p.Lys96AsnfsTer2
T19D12.4b.1:c.2645+514_2646-480delinsCTTTAA
T19D12.5.1:c.288_627delinsTTAAAG
T19D12.4a.1:c.2684+514_2685-480delinsCTTTAA
HGVSgCHROMOSOME_II:g.6635445_6635876delinsCTTTAA
Sequence_detailsSMapS_parentSequenceT19D12
Flanking_sequencestccactttccattttatatcttcgtacaagttcttcggttccactttaattgccacctcc
Mapping_targetT19D12
Source_location7CHROMOSOME_II66354446635877Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationInsertionCTTTAA
Deletion
PCR_producttm4115_external
tm4115_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq4115
NBP_allele
StatusLive
AffectsGeneWBGene00020579
WBGene00020580
TranscriptT19D12.5.1 (11)
T19D12.4b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT19D12.4b.1:c.2645+514_2646-480delinsCTTTAA
Intron_number11/12
T19D12.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT19D12.4a.1:c.2684+514_2685-480delinsCTTTAA
Intron_number11/13
IsolationMutagenTMP/UV
GeneticsMapII
DescriptionPhenotype_not_observedWBPhenotype:0000062Person_evidenceWBPerson7743
Curator_confirmedWBPerson2021
RemarkClassified as homozygous viable by the National Bioresource Project of JapanPerson_evidenceWBPerson7743
Curator_confirmedWBPerson2021
Remark4622/4623-CTTTAA-5054/5055 (432 bp deletion + 6 bp insertion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele