WormBase Tree Display for Variation: WBVar00252236

WBVar00252236 Name: Public_name: tm3585
    Other_name: F40F8.9.1:c.70_273del
      CE05848:p.Val24_Gln91del
    HGVSg: CHROMOSOME_II:g.11127022_11127225del
  Sequence_details: SMap: S_parent: Sequence: F40F8
    Flanking_sequences: ttgttcgagcagcttgacaaaaaattatta gtttttaaatgatttttctataatctatct
    Mapping_target: F40F8
    Source_location: 7 CHROMOSOME_II 11127021 11127226 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3585_external
      tm3585_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004795
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3585
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003076
    Transcript: F40F8.9.1 VEP_consequence: inframe_deletion,splice_region_variant
        VEP_impact: MODERATE
        HGVSc: F40F8.9.1:c.70_273del
        HGVSp: CE05848:p.Val24_Gln91del
        cDNA_position: 73-276
        CDS_position: 70-273
        Protein_position: 24-91
        Exon_number: 2/4
        Codon_change: GTTGTTCTCCGCGACGGACGGAAATTGATTGGCTTCTTGAGATCGATAGATCAATTTGCCAATCTTATATTGGAAGATGTCGTAGAACGCACATTTGTTGAGAAATACTTCTGTGAAACGGGTCAAGGATTCATGCTTATTCGCGGAGAGAATGTTGAGCTTGCTGGAGAAATCGATGATACCATTGAGACTGGACTTACGCAG/-
        Amino_acid_change: VVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENVELAGEIDDTIETGLTQ/-
    Interactor: WBInteraction000532916
  Isolation: Mutagen: TMP/UV
  Genetics: Map: II
  Description: Phenotype (15)
  Reference: WBPaper00047010
  Remark: 1747/1748-1951/1952 (204 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele