WormBase Tree Display for Variation: WBVar00252164

WBVar00252164 Name: Public_name: tm3495
    Other_name: F29G6.3f.2:c.183+86_367delinsGATAA
      F29G6.3b.1:c.183+86_367delinsGATAA
      F29G6.3f.3:c.183+86_367delinsGATAA
      F29G6.3c.1:c.183+86_367delinsGATAA
      F29G6.3f.1:c.183+86_367delinsGATAA
      F29G6.3a.1:c.183+86_367delinsGATAA
    HGVSg: CHROMOSOME_X:g.11518244_11518648delinsTTATC
  Sequence_details: SMap: S_parent: Sequence: F29G6
    Flanking_sequences: caacaacagcttccccaacaacaatcggag ataagttatcaaatcagaagtaaaaaaaat
    Mapping_target: F29G6
    Source_location: 7 CHROMOSOME_X 11518243 11518649 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: TTATC
      Deletion
    PCR_product: tm3495_external
      tm3495_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3495
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00009259
    Transcript: F29G6.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F29G6.3b.1:c.183+86_367delinsGATAA
        cDNA_position: ?-413
        CDS_position: ?-367
        Protein_position: ?-123
        Intron_number: 4-6/19
        Exon_number: 5-7/20
      F29G6.3c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F29G6.3c.1:c.183+86_367delinsGATAA
        cDNA_position: ?-367
        CDS_position: ?-367
        Protein_position: ?-123
        Intron_number: 3-5/18
        Exon_number: 4-6/19
      F29G6.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F29G6.3a.1:c.183+86_367delinsGATAA
        cDNA_position: ?-410
        CDS_position: ?-367
        Protein_position: ?-123
        Intron_number: 4-6/19
        Exon_number: 5-7/20
      F29G6.3d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-94
        CDS_position: ?-94
        Protein_position: ?-32
        Intron_number: 1/13
        Exon_number: 1-2/14
      F29G6.3f.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F29G6.3f.2:c.183+86_367delinsGATAA
        cDNA_position: ?-416
        CDS_position: ?-367
        Protein_position: ?-123
        Intron_number: 4-6/18
        Exon_number: 5-7/19
      F29G6.3f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F29G6.3f.1:c.183+86_367delinsGATAA
        cDNA_position: ?-416
        CDS_position: ?-367
        Protein_position: ?-123
        Intron_number: 4-6/17
        Exon_number: 5-7/18
      F29G6.3f.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F29G6.3f.3:c.183+86_367delinsGATAA
        cDNA_position: ?-401
        CDS_position: ?-367
        Protein_position: ?-123
        Intron_number: 4-6/16
        Exon_number: 5-7/17
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. R. Aroian: Normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 20621/20622-TTATC-21026/21027 (405 bp deletion + 5 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele