WormBase Tree Display for Variation: WBVar00251957

WBVar00251957 Name: Public_name: tm3197
    Other_name: C29F7.6a.1:c.497_748del
      CE51385:p.Val166_Phe249del
    HGVSg: CHROMOSOME_X:g.13438243_13438494del
  Sequence_details: SMap: S_parent: Sequence: C29F7
    Flanking_sequences: ctggagtacggcaaattttgaaaaatcttg ccttccagaaaaacaccaaatcagctgtgc
    Mapping_target: C29F7
    Source_location: 7 CHROMOSOME_X 13438242 13438495 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3197_external
      tm3197_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3197
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00007813
    Transcript: C29F7.6a.1 VEP_consequence: inframe_deletion
        VEP_impact: MODERATE
        HGVSc: C29F7.6a.1:c.497_748del
        HGVSp: CE51385:p.Val166_Phe249del
        cDNA_position: 529-780
        CDS_position: 497-748
        Protein_position: 166-250
        Exon_number: 4/9
        Codon_change: gTTTCCGCCGTCGAAAACTCTAAATCCAAAAATACCAGAGGAAGGAAAAGCAAAATACAATCAAATCTCACACCCATCAACGAAAAGTCAGAATGCAAAATCATAAAAAGGAAGAACGAAAAAACTCCGTTACTTCTGTTGACCGTGCCGATGTTTCTCGATCCTCTCACCACATCAGGCACCGAAATCGTGAAAAAAGCATCTGAGTGGTTGACTACAGGTCGAAACAATGTCTATAACGACAAGAAGTTTGcc/gcc
        Amino_acid_change: VSAVENSKSKNTRGRKSKIQSNLTPINEKSECKIIKRKNEKTPLLLLTVPMFLDPLTTSGTEIVKKASEWLTTGRNNVYNDKKFA/A
    Interactor: WBInteraction000521423
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
      WBPhenotype:0000643 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. Hongkyun Kim: normal locomotion. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: HKK
      WBPhenotype:0000695 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comment to the NBP from Dr. M. Han: normal vulval phenotype. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: MH
      WBPhenotype:0000709 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Comments to the National Bioresource Project of Japan: Dr. R.H. Horvitz: pharyngeal morphology normal. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Remark: 30405/30406-30657/30658 (252 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele