WormBase Tree Display for Variation: WBVar00251912

WBVar00251912 Name: Public_name: tm3138
    Other_name: C46H11.11h.1:c.1641+166_1730delinsG
      C46H11.11g.1:c.1692+46_1781delinsG
      C46H11.11d.1:c.687+46_776delinsG
      C46H11.11e.1:c.1692+46_1781delinsG
      C46H11.11c.1:c.687+46_776delinsG
      C46H11.11b.1:c.636+166_725delinsG
      C46H11.11f.1:c.1641+166_1730delinsG
      C46H11.11a.1:c.636+166_725delinsG
    HGVSg: CHROMOSOME_I:g.5063515_5064028delinsC
  Sequence_details: SMap: S_parent: Sequence: C30F8
    Flanking_sequences: agcttgtcccttcgacttgtcaacggtttg aatttcgtgcacaatccacatgttgctttc
    Mapping_target: C30F8
    Source_location: 7 CHROMOSOME_I 5063513 5064029 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Insertion: AC
      Deletion
    PCR_product: tm3138_external
      tm3138_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3138
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00016735
    Transcript: C46H11.11g.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11g.1:c.1692+46_1781delinsG
        cDNA_position: ?-1782
        CDS_position: ?-1782
        Protein_position: ?-594
        Intron_number: 5/15
        Exon_number: 6/16
      C46H11.11e.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11e.1:c.1692+46_1781delinsG
        cDNA_position: ?-1782
        CDS_position: ?-1782
        Protein_position: ?-594
        Intron_number: 5/16
        Exon_number: 6/17
      C46H11.11f.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11f.1:c.1641+166_1730delinsG
        cDNA_position: ?-1735
        CDS_position: ?-1731
        Protein_position: ?-577
        Intron_number: 5/16
        Exon_number: 6/17
      C46H11.11d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11d.1:c.687+46_776delinsG
        cDNA_position: ?-780
        CDS_position: ?-777
        Protein_position: ?-259
        Intron_number: 7/18
        Exon_number: 8/19
      C46H11.11b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11b.1:c.636+166_725delinsG
        cDNA_position: ?-727
        CDS_position: ?-726
        Protein_position: ?-242
        Intron_number: 6/17
        Exon_number: 7/18
      C46H11.11c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11c.1:c.687+46_776delinsG
        cDNA_position: ?-777
        CDS_position: ?-777
        Protein_position: ?-259
        Intron_number: 6/17
        Exon_number: 7/18
      C46H11.11h.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11h.1:c.1641+166_1730delinsG
        cDNA_position: ?-1731
        CDS_position: ?-1731
        Protein_position: ?-577
        Intron_number: 4/14
        Exon_number: 5/15
      C46H11.11a.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C46H11.11a.1:c.636+166_725delinsG
        cDNA_position: ?-727
        CDS_position: ?-726
        Protein_position: ?-242
        Intron_number: 6/18
        Exon_number: 7/19
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description: Phenotype: WBPhenotype:0000087 Paper_evidence: WBPaper00041258
        Curator_confirmed: WBPerson3809
        Remark: thin body-wall muscle cells Paper_evidence: WBPaper00041258
            Curator_confirmed: WBPerson3809
      WBPhenotype:0000861 Paper_evidence: WBPaper00041258
        Curator_confirmed: WBPerson557
        Remark: In fhod-1(tm3138) mutants the dorsal and ventral pairs of body wall muscles have wider spaces between them than wild type. Paper_evidence: WBPaper00041258
            Curator_confirmed: WBPerson557
    Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National Bioresource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
            Laboratory_evidence: FX
  Reference: WBPaper00041258
  Remark: 43758/43759-AC-44273/44274 (515 bp deletion + 2 bp insertion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
    Old Mapping_target C46H11 updated based on the VEP analysis pipeline to C30F8.
  Method: NBP_knockout_allele