WormBase Tree Display for Variation: WBVar00249436

WBVar00249436 Name: Public_name: tm388
    Other_name: B0414.2.1:c.307+18_381+200del
      B0414.2.2:c.307+18_381+200del
      B0414.2.3:c.307+18_381+200del
    HGVSg: CHROMOSOME_I:g.5785318_5786375del
  Sequence_details: SMap: S_parent: Sequence: B0414
    Flanking_sequences: cggtccggcagaggtgagtactgtagccaa tgtgctatttttgaggcaaaatagattttt
    Mapping_target: B0414
    Source_location: 7 CHROMOSOME_I 5785317 5786376 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm388_external
      tm388_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 388
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004393
    Transcript: B0414.2.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0414.2.3:c.307+18_381+200del
        Intron_number: 7-8/12
        Exon_number: 8/13
      B0414.2.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0414.2.2:c.307+18_381+200del
        Intron_number: 7-8/12
        Exon_number: 8/13
      B0414.2.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: B0414.2.1:c.307+18_381+200del
        Intron_number: 4-5/9
        Exon_number: 5/10
    Interactor: WBInteraction000502237
      WBInteraction000502238
      WBInteraction000524653
      WBInteraction000538733
      WBInteraction000538734
      WBInteraction000538735
  Isolation: Mutagen: TMP/UV
  Genetics: Map: I
  Description (2)
  Reference: WBPaper00035069
    WBPaper00026860
  Remark: 13728/13729-14786/14787 (1058 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele