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WormBase Tree Display for Variation: WBVar00248987

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Name Class

WBVar00248987EvidencePaper_evidenceWBPaper00004721
NamePublic_namesy429
Other_nameC09E10.2e.1:c.742-1G>A
C09E10.2b.1:c.841-1G>A
C09E10.2d.1:c.840+200G>A
C09E10.2c.1:c.834+200G>A
C09E10.2a.1:c.835-1G>A
HGVSgCHROMOSOME_X:g.988733C>T
Sequence_detailsSMapS_parentSequenceC09E10
Flanking_sequencescaatttccaacaacgtttcccccatttctaatttcgcgcaatatcgtagttgccaaacac
Mapping_targetC09E10
Type_of_mutationSubstitutiongaPaper_evidenceWBPaper00024616
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryPS
StatusLive
AffectsGeneWBGene00000958
TranscriptC09E10.2d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC09E10.2d.1:c.840+200G>A
Intron_number6/13
C09E10.2c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScC09E10.2c.1:c.834+200G>A
Intron_number6/13
C09E10.2a.1VEP_consequencesplice_acceptor_variant
VEP_impactHIGH
HGVScC09E10.2a.1:c.835-1G>A
Intron_number7/17
C09E10.2e.1VEP_consequencesplice_acceptor_variant
VEP_impactHIGH
HGVScC09E10.2e.1:c.742-1G>A
Intron_number5/14
C09E10.2b.1VEP_consequencesplice_acceptor_variant
VEP_impactHIGH
HGVScC09E10.2b.1:c.841-1G>A
Intron_number7/17
GeneticsInterpolated_map_positionX-18.8703
DescriptionPhenotypeWBPhenotype:0000641Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
RemarkDispersal index in the absence of anesthetic ~0.62 is decreased compared to N2 ~0.90.Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Phenotype_assayTreatmentDispersal assay as reported in Crowder et al.1996; van Swinderen et al. 1997.Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Phenotype_not_observedWBPhenotype:0001618Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
RemarkAnimals exhibit an EC50 for halothane statistically insignificant from that of N2 as determined by a concentration-response curve based on animal dispersal indexes.Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Variation_effectHypomorph_reduction_of_functionPaper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00001705Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Genotypegoa-1(syIs17)Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
WBPhenotype:0001619Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
RemarkAnimals exhibit an EC50 for isoflurane statistically insignificant from that of N2 as determined by a concentration-response curve based on animal dispersal indexes.Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Variation_effectHypomorph_reduction_of_functionPaper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Affected_byMoleculeWBMol:00004563Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Phenotype_assayTemperature25CPaper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
Genotypegoa-1(syIs17)Paper_evidenceWBPaper00004721
Curator_confirmedWBPerson712
ReferenceWBPaper00004721
RemarkThis allele has the same mutation as sy425Paper_evidenceWBPaper00024616
MethodSubstitution_allele