WormBase Tree Display for Variation: WBVar00248909
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| WBVar00248909 | Evidence | Person_evidence | WBPerson625 | ||
|---|---|---|---|---|---|
| Name | Public_name | sy97 | |||
| Other_name | ZK1067.1a.1:c.3803-1G>T | ||||
| ZK1067.1b.1:c.3620-1G>T | |||||
| ZK1067.1c.1:c.3818-1G>T | |||||
| ZK1067.1d.1:c.3839-1G>T | |||||
| HGVSg | CHROMOSOME_II:g.9206768G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK1067 | |
| Flanking_sequences | ttttcacccaacgcattaaaaaagttacttttaaaataataaattttca | agctatccccatcaaatggcgattactacaaccaaccaaacactccttca | |||
| Mapping_target | ZK1067 | ||||
| Type_of_mutation | Substitution | a | t | ||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00022495 | ||||
| WBStrain00030810 | |||||
| WBStrain00030821 | |||||
| Laboratory | PS | ||||
| Author | Aroian R | ||||
| Sternberg P | |||||
| Person | WBPerson625 | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00002299 | |||
| Transcript | ZK1067.1d.1 | VEP_consequence | splice_acceptor_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | ZK1067.1d.1:c.3839-1G>T | ||||
| Intron_number | 19/20 | ||||
| ZK1067.1b.1 | VEP_consequence | splice_acceptor_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK1067.1b.1:c.3620-1G>T | ||||
| Intron_number | 15/15 | ||||
| ZK1067.1c.1 | VEP_consequence | splice_acceptor_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK1067.1c.1:c.3818-1G>T | ||||
| Intron_number | 17/18 | ||||
| ZK1067.1a.1 | VEP_consequence | splice_acceptor_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | ZK1067.1a.1:c.3803-1G>T | ||||
| Intron_number | 18/19 | ||||
| Interactor | WBInteraction000000671 | ||||
| WBInteraction000500653 | |||||
| WBInteraction000504224 | |||||
| WBInteraction000524138 | |||||
| WBInteraction000524142 | |||||
| WBInteraction000538578 | |||||
| Isolation | Mutagen | EMS | |||
| Forward_genetics | standard phenotypic screen | ||||
| Genetics | Interpolated_map_position | II | 1.09465 | ||
| Description | Phenotype (13) | ||||
| Reference (27) | |||||
| Remark | Isolated in 1987 as a suppressor of the lin-15(n309) multivulva phenotype | Person_evidence | WBPerson26 | ||
| alt_det = affects splide acceptor and causes a missolice two nt 3'; thus a frameshift that replaces C-terminal 56 amino acids with 23 novel amino acids mut_det = ag --> aa at splice acceptor of exon 18 | |||||
| Method | Substitution_allele |
