WormBase Tree Display for Variation: WBVar00248620
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WBVar00248620 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00248620 | |||
Other_name | snp_ZK849[2] | ||||
ZK849.2b.1:c.-89_-88del | |||||
ZK849.2c.1:c.28-691_28-690del | |||||
HGVSg | CHROMOSOME_I:g.14188983_14188984del | ||||
Sequence_details | SMap | S_parent | Sequence | ZK849 | |
Flanking_sequences | gagaactgggtgtgtgtgtgtgtgt | ttgttggaatagggtggaaaagagc | |||
Mapping_target | ZK849 | ||||
Type_of_mutation | Deletion | GT | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00014101 | |||
Transcript | ZK849.2c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | ZK849.2c.1:c.28-691_28-690del | ||||
Intron_number | 2/9 | ||||
ZK849.2b.1 | VEP_consequence | 5_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | ZK849.2b.1:c.-89_-88del | ||||
cDNA_position | 71-72 | ||||
Exon_number | 1/11 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8888 VarD2=GT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_ZK849.2 | |||||
[20040130 db] this Allele was previously named snp_ZK849.2 | |||||
[20090224 db] original Wicks name : ZK849:8662..9874@323 Psnp=0.8888 VarD2=GT | |||||
[20090224 db] original Wicks id : eam44b09.s1@254,-,38 eam44b09.s2@257,-,59 | |||||
Method | SNP_Wicks |