WormBase Tree Display for Variation: WBVar00248619
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| WBVar00248619 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00248619 | |||
| Other_name | snp_ZK849[1] | ||||
| ZK849.2b.1:c.-54_-53insATC | |||||
| ZK849.2a.1:c.-54_-53insATC | |||||
| ZK849.2c.1:c.28-656_28-655insATC | |||||
| HGVSg | CHROMOSOME_I:g.14188948_14188949insGAT | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK849 | |
| Flanking_sequences | tgatgatgatgatgatgatgatgat | atgtgtggagaactgggtgtgtgtg | |||
| Mapping_target | ZK849 | ||||
| Type_of_mutation | Insertion | GAT | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00014101 | |||
| Transcript | ZK849.2c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK849.2c.1:c.28-656_28-655insATC | ||||
| Intron_number | 2/9 | ||||
| ZK849.2a.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK849.2a.1:c.-54_-53insATC | ||||
| cDNA_position | 19-20 | ||||
| Exon_number | 1/11 | ||||
| ZK849.2b.1 | VEP_consequence | 5_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK849.2b.1:c.-54_-53insATC | ||||
| cDNA_position | 106-107 | ||||
| Exon_number | 1/11 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.8888 VarI3=GAT | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_ZK849.1 | |||||
| [20040130 db] this Allele was previously named snp_ZK849.1 | |||||
| [20090224 db] original Wicks name : ZK849:8662..9874@289 Psnp=0.8888 VarI3=GAT | |||||
| [20090224 db] original Wicks id : eam44b09.s1@222,t,47 eam44b09.s2@225,t,59 | |||||
| Method | SNP_Wicks |
