WormBase Tree Display for Variation: WBVar00248521

WBVar00248521 Name: Public_name: WBVar00248521
    Other_name: snp_ZK270[1]
      cewivar00175300
      CE34145:p.Leu404=
      ZK270.2e.1:c.1212G>A
      ZK270.2a.1:c.1179G>A
      ZK270.2d.1:c.1179G>A
      ZK270.2b.1:c.1161+851G>A
      CE34144:p.Leu393=
      CE34142:p.Leu393=
    HGVSg: CHROMOSOME_I:g.14893725C>T
  Sequence_details: SMap: S_parent: Sequence: ZK270
    Flanking_sequences: tcgatgatgtgtaggacttcggtgt aaagcgcgtcggtatctctgaaaat
    Mapping_target: ZK270
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
          WGS_De_Bono
          Million_mutation_project_reanalysis
      WBStrain00023139 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023665 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027648 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027660 From_analysis: Million_mutation_project_reanalysis
    Laboratory: AX
    Analysis: SNP_Wicks
      WGS_De_Bono
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar01357252
    Status: Live
  Affects: Gene: WBGene00001488
    Transcript: ZK270.2b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: ZK270.2b.1:c.1161+851G>A
        Intron_number: 7/12
      ZK270.2d.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: ZK270.2d.1:c.1179G>A
        HGVSp: CE34144:p.Leu393=
        cDNA_position: 1179
        CDS_position: 1179
        Protein_position: 393
        Exon_number: 7/15
        Codon_change: ttG/ttA
        Amino_acid_change: L
      ZK270.2e.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: ZK270.2e.1:c.1212G>A
        HGVSp: CE34145:p.Leu404=
        cDNA_position: 1321
        CDS_position: 1212
        Protein_position: 404
        Exon_number: 9/14
        Codon_change: ttG/ttA
        Amino_acid_change: L
      ZK270.2a.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: ZK270.2a.1:c.1179G>A
        HGVSp: CE34142:p.Leu393=
        cDNA_position: 1184
        CDS_position: 1179
        Protein_position: 393
        Exon_number: 8/14
        Codon_change: ttG/ttA
        Amino_acid_change: L
  Reference: WBPaper00004703
    WBPaper00037807
  Remark: Predicted SNP: Psnp=0.9427 VarS=CT
    Enzymes. Bristol-specific: [DrdI,DseDI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_ZK270.1
    [20040130 db] this Allele was previously named snp_ZK270.1
    [20090224 db] original Wicks name : ZK270:12678..13462@437 Psnp=0.9427 VarS=CT
    [20090224 db] original Wicks id : yy59b02.s1@298,t,59
    [20090224 db] Snip-SNP
  Method: SNP_Wicks