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WormBase Tree Display for Variation: WBVar00248468

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Name Class

WBVar00248468NamePublic_nameWBVar00248468
Other_namesnp_ZC395[1]
cewivar00196535
T15B12.1b.1:c.492+159T>G
T15B12.1a.2:c.-139+159T>G
HGVSgCHROMOSOME_III:g.5289739T>G
Sequence_detailsSMapS_parentSequenceZC395
Flanking_sequencestaaaaaagccaaaaaaatcttcgttttcggttttcagactcccaaaaaat
Mapping_targetZC395
Type_of_mutationSubstitutionTG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (12)
LaboratoryAX
AnalysisSNP_Wicks
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01263545
StatusLive
AffectsGeneWBGene00020530
TranscriptT15B12.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT15B12.1b.1:c.492+159T>G
Intron_number5/11
T15B12.1a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScT15B12.1a.2:c.-139+159T>G
Intron_number4/12
ReferenceWBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.5492 VarS=GT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_ZC395.1
[20040130 db] this Allele was previously named snp_ZC395.1
[20090224 db] original Wicks name : ZC395:25616..26858@536 Psnp=0.5492 VarS=GT
[20090224 db] original Wicks id : yy49c03.s1@580,g,20 yx27a11.s1@649,g,7
MethodSNP_Wicks