WormBase Tree Display for Variation: WBVar00248468
expand all nodes | collapse all nodes | view schema
WBVar00248468 | Name | Public_name | WBVar00248468 | ||
---|---|---|---|---|---|
Other_name | snp_ZC395[1] | ||||
cewivar00196535 | |||||
T15B12.1b.1:c.492+159T>G | |||||
T15B12.1a.2:c.-139+159T>G | |||||
HGVSg | CHROMOSOME_III:g.5289739T>G | ||||
Sequence_details | SMap | S_parent | Sequence | ZC395 | |
Flanking_sequences | taaaaaagccaaaaaaatcttcgtt | ttcggttttcagactcccaaaaaat | |||
Mapping_target | ZC395 | ||||
Type_of_mutation | Substitution | T | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (12) | |||||
Laboratory | AX | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01263545 | |||
Status | Live | ||||
Affects | Gene | WBGene00020530 | |||
Transcript | T15B12.1b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | T15B12.1b.1:c.492+159T>G | ||||
Intron_number | 5/11 | ||||
T15B12.1a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | T15B12.1a.2:c.-139+159T>G | ||||
Intron_number | 4/12 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.5492 VarS=GT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_ZC395.1 | |||||
[20040130 db] this Allele was previously named snp_ZC395.1 | |||||
[20090224 db] original Wicks name : ZC395:25616..26858@536 Psnp=0.5492 VarS=GT | |||||
[20090224 db] original Wicks id : yy49c03.s1@580,g,20 yx27a11.s1@649,g,7 | |||||
Method | SNP_Wicks |