WormBase Tree Display for Variation: WBVar00248333

WBVar00248333 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00248333
    Other_name: snp_Y111B2A[6]
      Y111B2A.4a.1:c.2211+118G>A
    HGVSg: CHROMOSOME_III:g.12513682G>A
  Sequence_details: SMap: S_parent: Sequence: Y111B2A
    Flanking_sequences: tatataattttcagctccaactacgcgaagctctcgacgcgaacacagaaaagactgaagaatgtgaaaaactgcacattgagacacgaaatctcgaacgagaagtggatcttcgtcagaattgtgtcgatgagatgattgcacagacgaataccctccaaatgcaacaagagagcatgtcgacagcaatgaaaacccttcagaagcagattctagcgaatgaacgagaaatttgtcagttggaggagaagctcaccgagtctgaactgaaaactcagagatcggaggaaaaagtgaagaatctcgaggattttattgttggggagaggatggaggaggcagaagcagaagcagaagcagcagcggatggaggaggtgctcggaatgaagtttcacatttgaaacgatatattgcagatttacaggtgaaaattttggaaaattcggaaattttctgtttttgccgaaatttcgccgaaaaacggcgggtttttgttgagtttgccggatattttcatgttcggcaaaaatgccgatttgcc gatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccggatattttcatgttcggcaaaagtaccgatttgccggatattttcatgttcggcaaaagtaccgatttgccagatatt
    Mapping_target: Y111B2A
    Type_of_mutation: Substitution: G A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00013730
    Transcript: Y111B2A.4a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y111B2A.4a.1:c.2211+118G>A
        Intron_number: 9/19
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.8806 VarS=AG
    Enzymes. Bristol-specific: [Asp748I,Bco27I,BsaZI,BshMI,BsiSI,Bsp116I,Bsp1591II,Bsp47I,Bsp48I,Bsp5I,Bst40I,Bsu1192I,BsuFI,FinII,HapII,Hin2I,Hin5I,HpaII,HpyF43I,HpyVIII,MniII,MnoI,MspI,Pde137I,Pme35I,SecII,SfaGUI,Sth134I,Uba1128I,Uba1141I,Uba1267I,Uba1338I,Uba1355I,Uba1439I]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_Y111B2.6
    [20040130 db] this Allele was previously named snp_Y111B2.6
    [20090224 db] this Variation was previously named snp_Y111B2[6]
    [20090224 db] original Wicks name : Y111B2A:19998..20975@796 Psnp=0.8806 VarS=AG
    [20090224 db] original Wicks id : eam48g10.s1@111,a,39
    [20090224 db] Snip-SNP
  Method: SNP_Wicks