WormBase Tree Display for Variation: WBVar00248331
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WBVar00248331 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00248331 | |||
Other_name | snp_Y111B2A[4] | ||||
cewivar00399675 | |||||
Y111B2A.4a.1:c.2211+105A>G | |||||
HGVSg | CHROMOSOME_III:g.12513669A>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y111B2A | |
Flanking_sequences | cagaagcagaagcagcagcggatggaggaggtgctcggaatgaagtttcacatttgaaacgatatattgcagatttacaggtgaaaattttggaaaattcggaaattttctgtttttgccgaaatttcgccgaaaaacggcgggtttttgttgagtttgccggatattttcatgttcggcaaaa | tgccgatttgccggatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggc | |||
Mapping_target | Y111B2A | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00013730 | |||
Transcript | Y111B2A.4a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y111B2A.4a.1:c.2211+105A>G | ||||
Intron_number | 9/19 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8806 VarS=AG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y111B2.4 | |||||
[20040130 db] this Allele was previously named snp_Y111B2.4 | |||||
[20090224 db] this Variation was previously named snp_Y111B2[4] | |||||
[20090224 db] original Wicks name : Y111B2A:19998..20975@783 Psnp=0.8806 VarS=AG | |||||
[20090224 db] original Wicks id : eam48g10.s1@124,g,39 | |||||
Method | SNP_Wicks |