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WormBase Tree Display for Variation: WBVar00248331

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Name Class

WBVar00248331EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00248331
Other_namesnp_Y111B2A[4]
cewivar00399675
Y111B2A.4a.1:c.2211+105A>G
HGVSgCHROMOSOME_III:g.12513669A>G
Sequence_detailsSMapS_parentSequenceY111B2A
Flanking_sequencescagaagcagaagcagcagcggatggaggaggtgctcggaatgaagtttcacatttgaaacgatatattgcagatttacaggtgaaaattttggaaaattcggaaattttctgtttttgccgaaatttcgccgaaaaacggcgggtttttgttgagtttgccggatattttcatgttcggcaaaatgccgatttgccggatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggcaaaagtaccgatttgccagatattttcatgttcggc
Mapping_targetY111B2A
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WBStrain00008273From_analysisMillion_mutation_project_reanalysis
WBStrain00022852From_analysisMillion_mutation_project_reanalysis
WBStrain00023191From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00013730
TranscriptY111B2A.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY111B2A.4a.1:c.2211+105A>G
Intron_number9/19
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8806 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y111B2.4
[20040130 db] this Allele was previously named snp_Y111B2.4
[20090224 db] this Variation was previously named snp_Y111B2[4]
[20090224 db] original Wicks name : Y111B2A:19998..20975@783 Psnp=0.8806 VarS=AG
[20090224 db] original Wicks id : eam48g10.s1@124,g,39
MethodSNP_Wicks