WormBase Tree Display for Variation: WBVar00248118
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WBVar00248118 | Name | Public_name | WBVar00248118 | ||
---|---|---|---|---|---|
Other_name | snp_Y73F8A[44] | ||||
haw157608 | |||||
cewivar00215239 | |||||
Y73F8A.26b.1:c.775-49G>C | |||||
Y73F8A.26a.1:c.1078-49G>C | |||||
HGVSg | CHROMOSOME_IV:g.15476605G>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y73F8A | |
Flanking_sequences | gtccaagcaacagagaaaccagtgt | acatggttgtgcttatagttaactt | |||
Mapping_target | Y73F8A | ||||
Type_of_mutation | Substitution | G | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00577473 | |||
Status | Live | ||||
Affects | Gene | WBGene00013531 | |||
Transcript | Y73F8A.26a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y73F8A.26a.1:c.1078-49G>C | ||||
Intron_number | 6/8 | ||||
Y73F8A.26b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y73F8A.26b.1:c.775-49G>C | ||||
Intron_number | 4/5 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9430 VarS=CG | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y73F8.44 | |||||
[20040130 db] this Allele was previously named snp_Y73F8.44 | |||||
[20090224 db] this Variation was previously named snp_Y73F8[44] | |||||
[20090224 db] original Wicks name : Y73F8A:249520..250459@749 Psnp=0.9430 VarS=CG | |||||
[20090224 db] original Wicks id : eam57e07.s1@118,c,62 | |||||
Method | SNP_Wicks |