WormBase Tree Display for Variation: WBVar00248054
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| WBVar00248054 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00248054 | |||
| Other_name | snp_Y73B6BL[5] | ||||
| Y73B6BL.21b.1:c.104-85_104-84insGG | |||||
| Y73B6BL.21d.1:c.317-85_317-84insGG | |||||
| Y73B6BL.21a.1:c.479-85_479-84insGG | |||||
| HGVSg | CHROMOSOME_IV:g.6399207_6399208dup | ||||
| Sequence_details | SMap | S_parent | Sequence | Y73B6BL | |
| Flanking_sequences | ctctttcttcgaaatctgacccccc | atggttcttcccgcacacacacaca | |||
| Mapping_target | Y73B6BL | ||||
| Type_of_mutation | Insertion | CC | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00022242 | |||
| Transcript | Y73B6BL.21d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y73B6BL.21d.1:c.317-85_317-84insGG | ||||
| Intron_number | 3/6 | ||||
| Y73B6BL.21a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y73B6BL.21a.1:c.479-85_479-84insGG | ||||
| Intron_number | 5/9 | ||||
| Y73B6BL.21b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y73B6BL.21b.1:c.104-85_104-84insGG | ||||
| Intron_number | 1/4 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.8227 VarI2=CC | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_Y73B6BL.5 | |||||
| [20040130 db] this Allele was previously named snp_Y73B6BL.5 | |||||
| [20090224 db] original Wicks name : Y73B6BL:112391..113348@690 Psnp=0.8227 VarI2=CC | |||||
| [20090224 db] original Wicks id : eam62a11.s1@614,c,38 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
