WormBase Tree Display for Variation: WBVar00248023
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WBVar00248023 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00248023 | |||
Other_name | snp_Y71H2AM[12] | ||||
Y71H2AM.2a.3:c.633+157dup | |||||
Y71H2AM.2a.2:c.633+157dup | |||||
Y71H2AM.2b.1:c.633+157dup | |||||
Y71H2AM.2a.1:c.633+157dup | |||||
HGVSg | CHROMOSOME_III:g.2823866dup | ||||
Sequence_details | SMap | S_parent | Sequence | Y71H2AM | |
Flanking_sequences | attgtggaattttcgattttttttt | gtaacatttcgagctgaaacatttt | |||
Mapping_target | Y71H2AM | ||||
Type_of_mutation | Insertion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00022167 | |||
Transcript | Y71H2AM.2b.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y71H2AM.2b.1:c.633+157dup | ||||
Intron_number | 4/6 | ||||
Y71H2AM.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71H2AM.2a.1:c.633+157dup | ||||
Intron_number | 4/6 | ||||
Y71H2AM.2a.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71H2AM.2a.3:c.633+157dup | ||||
Intron_number | 4/5 | ||||
Y71H2AM.2a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y71H2AM.2a.2:c.633+157dup | ||||
Intron_number | 4/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9174 VarI1=T | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y71H2AM.12 | |||||
[20040130 db] this Allele was previously named snp_Y71H2AM.12 | |||||
[20090224 db] original Wicks name : Y71H2AM:131959..132923@580 Psnp=0.9174 VarI1=T | |||||
[20090224 db] original Wicks id : yw17a08.s1@512,t,51 | |||||
Method | SNP_Wicks |