WormBase Tree Display for Variation: WBVar00248019
expand all nodes | collapse all nodes | view schema
| WBVar00248019 | Name | Public_name | WBVar00248019 | ||
|---|---|---|---|---|---|
| Other_name | snp_Y71H2AM[8] | ||||
| cewivar00195565 | |||||
| Y71H2AM.2a.3:c.167-993A>G | |||||
| Y71H2AM.2a.2:c.167-993A>G | |||||
| Y71H2AM.2a.1:c.167-993A>G | |||||
| Y71H2AM.2b.1:c.167-993A>G | |||||
| HGVSg | CHROMOSOME_III:g.2820715A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | Y71H2AM | |
| Flanking_sequences | ctaacactgcaactttttcctcacgagggacgagg | aaagtggtttctaggccatggccgaggggccgacaagtttcagcggccatttatcttgctttgttttccgcctgttttcttttgt | |||
| Mapping_target | Y71H2AM | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| WBStrain00022887 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| Analysis | SNP_Wicks | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01260534 | |||
| WBVar01329019 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022167 | |||
| Transcript | Y71H2AM.2b.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71H2AM.2b.1:c.167-993A>G | ||||
| Intron_number | 2/6 | ||||
| Y71H2AM.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71H2AM.2a.1:c.167-993A>G | ||||
| Intron_number | 2/6 | ||||
| Y71H2AM.2a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71H2AM.2a.3:c.167-993A>G | ||||
| Intron_number | 2/5 | ||||
| Y71H2AM.2a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y71H2AM.2a.2:c.167-993A>G | ||||
| Intron_number | 2/6 | ||||
| Reference | WBPaper00004703 | ||||
| WBPaper00037807 | |||||
| Remark | Predicted SNP: Psnp=0.7699 VarS=AG | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_Y71H2AM.8 | |||||
| [20040130 db] this Allele was previously named snp_Y71H2AM.8 | |||||
| [20090224 db] original Wicks name : Y71H2AM:128594..129522@794 Psnp=0.7699 VarS=AG | |||||
| [20090224 db] original Wicks id : eam84g04.s1@61,g,34 | |||||
| Method | SNP_Wicks |
