WormBase Tree Display for Variation: WBVar00247890
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WBVar00247890 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247890 | |||
Other_name | snp_Y67D8A[2] | ||||
cewivar00203917 | |||||
Y67D8A.2g.1:c.81+109A>C | |||||
Y67D8A.2b.1:c.2142+109A>C | |||||
Y67D8A.2d.1:c.279+109A>C | |||||
Y67D8A.2a.1:c.2142+109A>C | |||||
Y67D8A.2f.1:c.81+109A>C | |||||
Y67D8A.2e.1:c.279+109A>C | |||||
HGVSg | CHROMOSOME_IV:g.3238334A>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y67D8A | |
Flanking_sequences | cgaggggccgacaagtttcagcggccatttatcttgctttgtttt | cgcctgttttcttttgtttttcaca | |||
Mapping_target | Y67D8A | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022899 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00022059 | |||
Transcript | Y67D8A.2g.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y67D8A.2g.1:c.81+109A>C | ||||
Intron_number | 1/8 | ||||
Y67D8A.2f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y67D8A.2f.1:c.81+109A>C | ||||
Intron_number | 1/7 | ||||
Y67D8A.2e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y67D8A.2e.1:c.279+109A>C | ||||
Intron_number | 2/9 | ||||
Y67D8A.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y67D8A.2b.1:c.2142+109A>C | ||||
Intron_number | 12/21 | ||||
Y67D8A.2d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y67D8A.2d.1:c.279+109A>C | ||||
Intron_number | 2/8 | ||||
Y67D8A.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y67D8A.2a.1:c.2142+109A>C | ||||
Intron_number | 12/20 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9226 VarS=AC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y67D8.2 | |||||
[20040130 db] this Allele was previously named snp_Y67D8.2 | |||||
[20090224 db] this Variation was previously named snp_Y67D8[2] | |||||
[20090224 db] original Wicks name : Y67D8A:20861..21618@408 Psnp=0.9226 VarS=AC | |||||
[20090224 db] original Wicks id : yy55e11.s1@303,c,44 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |