WormBase Tree Display for Variation: WBVar00247816
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WBVar00247816 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247816 | |||
Other_name | snp_Y59C2A[5] | ||||
cewivar00683916 | |||||
Y59C2A.3.1:c.528+126del | |||||
HGVSg | CHROMOSOME_II:g.2218756del | ||||
Sequence_details | SMap | S_parent | Sequence | Y59C2A | |
Flanking_sequences | acttgaactcgtgacctccagactg | tagcggccaccacttccgactgagc | |||
Mapping_target | Y59C2A | ||||
Type_of_mutation | Deletion | C | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00021986 | |||
Transcript | Y59C2A.3.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y59C2A.3.1:c.528+126del | ||||
Intron_number | 3/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9226 VarD1=C | ||||
Enzymes. Bristol-specific: [AceII,AsuNHI,Cac8I,NheI,PstNHI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y59C2.5 | |||||
[20040130 db] this Allele was previously named snp_Y59C2.5 | |||||
[20090224 db] this Variation was previously named snp_Y59C2[5] | |||||
[20090224 db] original Wicks name : Y59C2A:17973..18882@403 Psnp=0.9226 VarD1=C | |||||
[20090224 db] original Wicks id : yy45e01.s1@452,-,62 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |