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WormBase Tree Display for Variation: WBVar00247720

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Name Class

WBVar00247720NamePublic_nameWBVar00247720
Other_namesnp_Y56A3A[14]
haw146735
cewivar00198854
Y56A3A.28.1:c.*117T>A
Y56A3A.28.2:c.*935T>A
HGVSgCHROMOSOME_III:g.11961018A>T
Sequence_detailsSMapS_parentSequenceY56A3A
Flanking_sequencesgtgggggttttcagggaaaaatgtgacaattcgaaaaaaaaaaatagaat
Mapping_targetY56A3A
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00022930From_analysisMillion_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00023191From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
WBStrain00027662From_analysisMillion_mutation_project_reanalysis
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00566600
StatusLive
AffectsGeneWBGene00013240
TranscriptY56A3A.28.1VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY56A3A.28.1:c.*117T>A
cDNA_position1287
Exon_number8/8
Y56A3A.28.2VEP_consequence3_prime_UTR_variant
VEP_impactMODIFIER
HGVScY56A3A.28.2:c.*935T>A
cDNA_position2112
Exon_number7/7
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.9420 VarS=AT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y56A3.14
[20040130 db] this Allele was previously named snp_Y56A3.14
[20090224 db] this Variation was previously named snp_Y56A3[14]
[20090224 db] original Wicks name : Y56A3A:126732..127728@488 Psnp=0.9420 VarS=AT
[20090224 db] original Wicks id : yy56e04.s1@422,t,56
[20090224 db] Snip-SNP
MethodSNP_Wicks