WormBase Tree Display for Variation: WBVar00247720
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WBVar00247720 | Name | Public_name | WBVar00247720 | ||
---|---|---|---|---|---|
Other_name | snp_Y56A3A[14] | ||||
haw146735 | |||||
cewivar00198854 | |||||
Y56A3A.28.1:c.*117T>A | |||||
Y56A3A.28.2:c.*935T>A | |||||
HGVSg | CHROMOSOME_III:g.11961018A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y56A3A | |
Flanking_sequences | gtgggggttttcagggaaaaatgtg | acaattcgaaaaaaaaaaatagaat | |||
Mapping_target | Y56A3A | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022930 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023191 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00566600 | |||
Status | Live | ||||
Affects | Gene | WBGene00013240 | |||
Transcript | Y56A3A.28.1 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y56A3A.28.1:c.*117T>A | ||||
cDNA_position | 1287 | ||||
Exon_number | 8/8 | ||||
Y56A3A.28.2 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y56A3A.28.2:c.*935T>A | ||||
cDNA_position | 2112 | ||||
Exon_number | 7/7 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
Remark | Predicted SNP: Psnp=0.9420 VarS=AT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y56A3.14 | |||||
[20040130 db] this Allele was previously named snp_Y56A3.14 | |||||
[20090224 db] this Variation was previously named snp_Y56A3[14] | |||||
[20090224 db] original Wicks name : Y56A3A:126732..127728@488 Psnp=0.9420 VarS=AT | |||||
[20090224 db] original Wicks id : yy56e04.s1@422,t,56 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |