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WormBase Tree Display for Variation: WBVar00247698

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Name Class

WBVar00247698EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247698
Other_namesnp_Y55F3BR[6]
cewivar00690262
Y55F3BR.8a.1:c.853-442del
Y55F3BR.8b.1:c.784-442del
HGVSgCHROMOSOME_IV:g.851106del
Sequence_detailsSMapS_parentSequenceY55F3BR
Flanking_sequencesgggaatttctgaattctctttagcgaaaaaattaattggtggcctaactt
Mapping_targetY55F3BR
Type_of_mutationDeletionC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00021945
TranscriptY55F3BR.8a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3BR.8a.1:c.853-442del
Intron_number5/7
Y55F3BR.8b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3BR.8b.1:c.784-442del
Intron_number4/6
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8888 VarD1=C
Enzymes. Bristol-specific: [AspLEI,BcaI,BspLAI,CcoP95I,CfoI,Csp1470I,FnuDIII,HhaI,Hin6I,Hin7I,HinGUI,HinP1I,HinS1I,HinS2I,Hpy99III,HpyF10I,HsoI,HspAI,MnnIV,NgoEII,SciNI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y55F3BR.6
[20040130 db] this Allele was previously named snp_Y55F3BR.6
[20090224 db] original Wicks name : Y55F3BR:23670..24508@478 Psnp=0.8888 VarD1=C
[20090224 db] original Wicks id : yx25d08.s1@123,-,39 yy45f07.s1@491,-,53
[20090224 db] Snip-SNP
MethodSNP_Wicks