WormBase Tree Display for Variation: WBVar00247698
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WBVar00247698 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247698 | |||
Other_name | snp_Y55F3BR[6] | ||||
cewivar00690262 | |||||
Y55F3BR.8a.1:c.853-442del | |||||
Y55F3BR.8b.1:c.784-442del | |||||
HGVSg | CHROMOSOME_IV:g.851106del | ||||
Sequence_details | SMap | S_parent | Sequence | Y55F3BR | |
Flanking_sequences | gggaatttctgaattctctttagcg | aaaaaattaattggtggcctaactt | |||
Mapping_target | Y55F3BR | ||||
Type_of_mutation | Deletion | C | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00021945 | |||
Transcript | Y55F3BR.8a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3BR.8a.1:c.853-442del | ||||
Intron_number | 5/7 | ||||
Y55F3BR.8b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y55F3BR.8b.1:c.784-442del | ||||
Intron_number | 4/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8888 VarD1=C | ||||
Enzymes. Bristol-specific: [AspLEI,BcaI,BspLAI,CcoP95I,CfoI,Csp1470I,FnuDIII,HhaI,Hin6I,Hin7I,HinGUI,HinP1I,HinS1I,HinS2I,Hpy99III,HpyF10I,HsoI,HspAI,MnnIV,NgoEII,SciNI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y55F3BR.6 | |||||
[20040130 db] this Allele was previously named snp_Y55F3BR.6 | |||||
[20090224 db] original Wicks name : Y55F3BR:23670..24508@478 Psnp=0.8888 VarD1=C | |||||
[20090224 db] original Wicks id : yx25d08.s1@123,-,39 yy45f07.s1@491,-,53 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |