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WormBase Tree Display for Variation: WBVar00247690

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Name Class

WBVar00247690NamePublic_nameWBVar00247690
Other_namesnp_Y55F3AM[6]
haw148476
cewivar00030630
Y55F3AM.4a.1:c.394-23A>G
HGVSgCHROMOSOME_IV:g.1011833A>G
Sequence_detailsSMapS_parentSequenceY55F3AM
Flanking_sequencesccctaaaatccgtgatttttttcgcctaattcttcaattttttccagcaa
Mapping_targetY55F3AM
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (22)
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00568341
StatusLive
AffectsGeneWBGene00021922
TranscriptY55F3AM.4a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY55F3AM.4a.1:c.394-23A>G
Intron_number2/4
ReferenceWBPaper00038208
WBPaper00004703
RemarkPredicted SNP: Psnp=0.8657 VarS=AG
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y55F3AM.6
[20040130 db] this Allele was previously named snp_Y55F3AM.6
[20090224 db] original Wicks name : Y55F3AM:32265..33032@180 Psnp=0.8657 VarS=AG
[20090224 db] original Wicks id : yy61d11.s1@531,g,38
[20090224 db] Snip-SNP
MethodSNP_Wicks