WormBase Tree Display for Variation: WBVar00247678

WBVar00247678 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00247678
    Other_name: snp_Y55B1BM[1]
      Y55B1BM.1a.1:c.594+158_594+159del
      Y55B1BM.1c.1:c.594+158_594+159del
      Y55B1BM.1b.1:c.594+158_594+159del
    HGVSg: CHROMOSOME_III:g.416789_416790del
  Sequence_details: SMap: S_parent: Sequence: Y55B1BM
    Flanking_sequences: tggaaacctctagagtttttttttt gaaaatccgcgagttgttttaatat
    Mapping_target: Y55B1BM
    Type_of_mutation: Deletion: TT
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00021910
    Transcript: Y55B1BM.1a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55B1BM.1a.1:c.594+158_594+159del
        Intron_number: 5/13
      Y55B1BM.1c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55B1BM.1c.1:c.594+158_594+159del
        Intron_number: 5/9
      Y55B1BM.1b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y55B1BM.1b.1:c.594+158_594+159del
        Intron_number: 5/12
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.9226 VarD2=TT
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_Y55B1BM.1
    [20040130 db] this Allele was previously named snp_Y55B1BM.1
    [20090224 db] original Wicks name : Y55B1BM:8026..8938@161 Psnp=0.9226 VarD2=TT
    [20090224 db] original Wicks id : yy44e12.s1@98,-,62
  Method: SNP_Wicks