WormBase Tree Display for Variation: WBVar00247642

WBVar00247642 Name: Public_name: WBVar00247642
    Other_name: snp_Y54G2A[30]
      haw150822
      cewivar00203631
      Y54G2A.24:n.40+332G>A
    HGVSg: CHROMOSOME_IV:g.2939491C>T
  Sequence_details: SMap: S_parent: Sequence: Y54G2A
    Flanking_sequences: gtgcctgtgttggtagctcacagcg ctaacgcgcgcctaccttcgtgcct
    Mapping_target: Y54G2A
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain (12)
    Person: WBPerson4037
    Analysis: SNP_Wicks
      WGS_Yanai
      Million_mutation_project_reanalysis
    History: Acquires_merge: WBVar00570687
    Status: Live
  Affects: Gene: WBGene00021889
    Pseudogene: Y54G2A.24 VEP_consequence: intron_variant,non_coding_transcript_variant
        VEP_impact: MODIFIER
        HGVSc: Y54G2A.24:n.40+332G>A
        Intron_number: 1/3
  Reference: WBPaper00038208
    WBPaper00004703
  Remark: Predicted SNP: Psnp=0.4429 VarS=CT
    Enzymes. Bristol-specific: [AccB2I,AspLEI,BcaI,Bme142I,BsmHI,Bsp143II,BspLAI,Bst1473II,Bst16I,BstH2I,Btu34II,CcoP95I,CfoI,Csp1470I,FnuDIII,HaeII,HhaI,Hin6I,Hin7I,HinGUI,HinHI,HinP1I,HinS1I,HinS2I,Hpy99III,HpyF10I,HsoI,HspAI,LpnI,MnnIV,NgoAI,NgoBI,NgoCI,NgoEII,NgoGI,NgoJI,NgoMI,NgoWI,SciNI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_Y54G2.30
    [20040130 db] this Allele was previously named snp_Y54G2.30
    [20090224 db] this Variation was previously named snp_Y54G2[30]
    [20090224 db] original Wicks name : Y54G2A:188552..189504@719 Psnp=0.4429 VarS=CT
    [20090224 db] original Wicks id : vd53a12.s1@161,t,27
    [20090224 db] Snip-SNP
  Method: SNP_Wicks