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WormBase Tree Display for Variation: WBVar00247581

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Name Class

WBVar00247581NamePublic_nameWBVar00247581
Other_namesnp_Y54E5A[1]
haw123287
cewivar00004960
Y54E5A.2.1:c.486A>G
CE42871:p.Arg162=
HGVSgCHROMOSOME_I:g.14695461A>G
Sequence_detailsSMapS_parentSequenceY54E5A
Flanking_sequencestcacgaaattgacgatcggctctcgaaaatcaataatttattgcactatt
Mapping_targetY54E5A
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00000032From_analysisMillion_mutation_project_reanalysis
WBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
WBStrain00023072From_analysisMillion_mutation_project_reanalysis
WBStrain00023139From_analysisMillion_mutation_project_reanalysis
WBStrain00023286From_analysisMillion_mutation_project_reanalysis
WBStrain00023665From_analysisMillion_mutation_project_reanalysis
WBStrain00027648From_analysisMillion_mutation_project_reanalysis
WBStrain00027652From_analysisMillion_mutation_project_reanalysis
WBStrain00027660From_analysisMillion_mutation_project_reanalysis
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00543152
WBVar01356828
StatusLive
AffectsGeneWBGene00013198
TranscriptY54E5A.2.1VEP_consequencesynonymous_variant
VEP_impactLOW
HGVScY54E5A.2.1:c.486A>G
HGVSpCE42871:p.Arg162=
cDNA_position502
CDS_position486
Protein_position162
Exon_number4/15
Codon_changecgA/cgG
Amino_acid_changeR
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9430 VarS=AG
Enzymes. Bristol-specific: [CviSIII,EsaBC3I,Hpy188III,Hpy26II,HpyCH4VI,HpyF14III,HpyF16I,HpyF16II,HpyF19III,HpyF22III,HpyF23I,HpyF24I,HpyF26III,HpyF30I,HpyF35I,HpyF40II,HpyF42IV,HpyF44IV,HpyF45I,HpyF49I,HpyF52I,HpyF59III,HpyF62II,HpyF64I,HpyF65II,HpyF66IV,HpyF71I,HpyF73II,HpyJP26II,HpyV,PpaAII,Taq20I,TaqI,Tbr51I,TfiA3I,TfiTok4A2I,TfiTok6A1I,TflI,Tsc4aI,Tsp32I,Tsp32II,Tsp358I,Tsp505I,Tsp510I,TspAK13D21I,TspAK16D24I,TspNI,TspVi4AI,TspVil3I,Tth24I,TthHB8I,TthRQI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y54E5.1
[20040130 db] this Allele was previously named snp_Y54E5.1
[20090224 db] this Variation was previously named snp_Y54E5[1]
[20090224 db] original Wicks name : Y54E5A:5174..5868@459 Psnp=0.9430 VarS=AG
[20090224 db] original Wicks id : eam61c12.s1@63,g,62
[20090224 db] Snip-SNP
MethodSNP_Wicks