WormBase Tree Display for Variation: WBVar00247581
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WBVar00247581 | Name | Public_name | WBVar00247581 | ||
---|---|---|---|---|---|
Other_name | snp_Y54E5A[1] | ||||
haw123287 | |||||
cewivar00004960 | |||||
Y54E5A.2.1:c.486A>G | |||||
CE42871:p.Arg162= | |||||
HGVSg | CHROMOSOME_I:g.14695461A>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y54E5A | |
Flanking_sequences | tcacgaaattgacgatcggctctcg | aaaatcaataatttattgcactatt | |||
Mapping_target | Y54E5A | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000032 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | AX | ||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00543152 | |||
WBVar01356828 | |||||
Status | Live | ||||
Affects | Gene | WBGene00013198 | |||
Transcript | Y54E5A.2.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | Y54E5A.2.1:c.486A>G | ||||
HGVSp | CE42871:p.Arg162= | ||||
cDNA_position | 502 | ||||
CDS_position | 486 | ||||
Protein_position | 162 | ||||
Exon_number | 4/15 | ||||
Codon_change | cgA/cgG | ||||
Amino_acid_change | R | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.9430 VarS=AG | ||||
Enzymes. Bristol-specific: [CviSIII,EsaBC3I,Hpy188III,Hpy26II,HpyCH4VI,HpyF14III,HpyF16I,HpyF16II,HpyF19III,HpyF22III,HpyF23I,HpyF24I,HpyF26III,HpyF30I,HpyF35I,HpyF40II,HpyF42IV,HpyF44IV,HpyF45I,HpyF49I,HpyF52I,HpyF59III,HpyF62II,HpyF64I,HpyF65II,HpyF66IV,HpyF71I,HpyF73II,HpyJP26II,HpyV,PpaAII,Taq20I,TaqI,Tbr51I,TfiA3I,TfiTok4A2I,TfiTok6A1I,TflI,Tsc4aI,Tsp32I,Tsp32II,Tsp358I,Tsp505I,Tsp510I,TspAK13D21I,TspAK16D24I,TspNI,TspVi4AI,TspVil3I,Tth24I,TthHB8I,TthRQI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y54E5.1 | |||||
[20040130 db] this Allele was previously named snp_Y54E5.1 | |||||
[20090224 db] this Variation was previously named snp_Y54E5[1] | |||||
[20090224 db] original Wicks name : Y54E5A:5174..5868@459 Psnp=0.9430 VarS=AG | |||||
[20090224 db] original Wicks id : eam61c12.s1@63,g,62 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |