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WormBase Tree Display for Variation: WBVar00247550

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Name Class

WBVar00247550NamePublic_nameWBVar00247550
Other_namesnp_Y53F4B[2]
haw137702
cewivar00145355
Y53F4B.6:n.424G>C
HGVSgCHROMOSOME_II:g.14986954G>C
Sequence_detailsSMapS_parentSequenceY53F4B
Flanking_sequencestatgatgatcggagaggcggtggcatggtggtggtggatacaacgatcgt
Mapping_targetY53F4B
Type_of_mutationSubstitutionGC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar00557567
WBVar01385923
StatusLive
AffectsGeneWBGene00013153
PseudogeneY53F4B.6VEP_consequencenon_coding_transcript_exon_variant
VEP_impactMODIFIER
HGVScY53F4B.6:n.424G>C
cDNA_position424
Exon_number2/2
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.9407 VarS=CG
Enzymes. Bristol-specific: [BtsI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y53F4B.2
[20040130 db] this Allele was previously named snp_Y53F4B.2
[20090224 db] original Wicks name : Y53F4B:35421..36307@386 Psnp=0.9407 VarS=CG
[20090224 db] original Wicks id : yy47e09.s1@459,c,53
[20090224 db] Snip-SNP
MethodSNP_Wicks