WormBase Tree Display for Variation: WBVar00247538
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| WBVar00247538 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00247538 | |||
| Other_name | snp_Y53C10A[8] | ||||
| cewivar00681903 | |||||
| CE54210:p.Ser5HisfsTer8 | |||||
| Y53C10A.25.1:c.10_13del | |||||
| HGVSg | CHROMOSOME_I:g.12029055_12029058del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y53C10A | |
| Flanking_sequences | cggaatttttttcaaaatgaagctg | cgacattattctccaacaaaatcgt | |||
| Mapping_target | Y53C10A | ||||
| Type_of_mutation | Deletion | CGAT | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00306076 | |||
| Transcript | Y53C10A.25.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y53C10A.25.1:c.10_13del | ||||
| HGVSp | CE54210:p.Ser5HisfsTer8 | ||||
| cDNA_position | 10-13 | ||||
| CDS_position | 10-13 | ||||
| Protein_position | 4-5 | ||||
| Exon_number | 1/1 | ||||
| Codon_change | CGATcg/cg | ||||
| Amino_acid_change | RS/X | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.6214 VarD4=CGAT | ||||
| Enzymes. Bristol-specific: [Afa16RI,Afa22MI,AspMDI,AsuMBI,Bce243I,Bfi57I,BmaAI,BmaBI,BmaCI,BmaDI,BmaI,Bme12I,BsaOI,BsaPI,BscFI,BscNI,Bsh1285I,BsiEI,BsmXII,Bsp105I,Bsp122I,Bsp135I,Bsp136I,Bsp138I,Bsp143I,Bsp147I,Bsp18I,Bsp2095I,Bsp49I,Bsp51I,Bsp52I,Bsp54I,Bsp57I,Bsp58I,Bsp59I,Bsp60I,Bsp61I,Bsp64I,Bsp65I,Bsp66I,Bsp67I,Bsp72I,Bsp74I,Bsp76I,Bsp91I,Bsp9I,BspAI,BspCI,BspFI,BspI,BspJ64I,BspJI,BspKT6I,BsrMI,BsrPII,BssGII,Bst1274I,BstEIII,BstMCI,BstXII,BstZ5I,BstZ8I,BtcI,BtkII,Btu33I,Btu34I,Btu36I,Btu37I,Btu39I,Btu41I,CacI,Cas2I,CcoP219I,CcoP31I,CcoP76I,CcoP84I,CcoP95II,CcyI,Cfr51I,CfuI,ChaI,Cin1467I,CjeP338I,CpaI,CpfAI,CpfI,Csp5I,Cte1179I,Cte1180I,CtyI,CviAI,CviHI,DpnI,DpnII,DrdIII,EagBI,EclJI,ErhB9I,FnuAII,FnuCI,FnuEI,HacI,HpyAIII,HpyHPK5II,Kpl79I,Kzo9I,LlaAI,LlaDCHI,LlaKR2I,Lsp1109II,MboI,MeuI,MgoI,MjaIII,MkrAI,MmeII,MnoIII,MosI,Mph1103II,Msp67II,MspBI,Mth1047I,MthAI,MthI,NanII,NblI,NciAI,NdeII,NflAII,NflBI,NflI,NgoDXIV,NlaDI,NlaII,NmeCI,NmuDI,NmuEI,NphI,NsiAI,NspAI,NsuDI,NsuI,Pei9403I,PfaI,Ple19I,PntI,Pph288I,Psu161I,Pvu84I,PvuI,RalF40I,Rlu1I,RshI,RspI,SalAI,SalHI,Sau15I,Sau3AI,Sau6782I,SauCI,SauDI,SauEI,SauFI,SauGI,SauMI,SinMI,SmaAIII,SmiMBI,SpaPII,SplAIII,TruII,Tsp133I,Uba1101I,Uba1129I,Uba1139I,Uba1177I,Uba1182I,Uba1183I,Uba1204I,Uba1259I,Uba1303I,Uba1317I,Uba1323I,Uba1366I,Uba4I,Uba59I,Vha44I,Xgl3216I,Xgl3217I,Xgl3218I,Xgl3219I,Xgl3220I,XmlAI,XmlI,XniI,XorII]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_Y53C10.8 | |||||
| [20040130 db] this Allele was previously named snp_Y53C10.8 | |||||
| [20090224 db] this Variation was previously named snp_Y53C10[8] | |||||
| [20090224 db] original Wicks name : Y53C10A:76456..77333@282 Psnp=0.6214 VarD4=CGAT | |||||
| [20090224 db] original Wicks id : vc86g07.s1@528,-,32 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
