WormBase Tree Display for Variation: WBVar00247508
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WBVar00247508 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247508 | |||
Other_name | snp_Y51H4A[4] | ||||
cewivar00217626 | |||||
CE35667:p.Ser134= | |||||
Y51H4A.1.1:c.402A>G | |||||
HGVSg | CHROMOSOME_IV:g.16474417T>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y51H4A | |
Flanking_sequences | acgtggcaaagtccaaagggaagga | gatgggcggggagatattgatgaga | |||
Mapping_target | Y51H4A | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00013098 | |||
Transcript | Y51H4A.1.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | Y51H4A.1.1:c.402A>G | ||||
HGVSp | CE35667:p.Ser134= | ||||
cDNA_position | 505 | ||||
CDS_position | 402 | ||||
Protein_position | 134 | ||||
Exon_number | 4/6 | ||||
Codon_change | tcA/tcG | ||||
Amino_acid_change | S | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8936 VarS=CT | ||||
Enzymes. Bristol-specific: [BseGI,BstF5I,BstPZ418I,FokI,HinGUII,Hpy178VI,HpyF67III,HpyF6I,StsI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y51H4.4 | |||||
[20040130 db] this Allele was previously named snp_Y51H4.4 | |||||
[20090224 db] this Variation was previously named snp_Y51H4[4] | |||||
[20090224 db] original Wicks name : Y51H4A:1753..3178@830 Psnp=0.8936 VarS=CT | |||||
[20090224 db] original Wicks id : eam32a06.s1@760,c,15 eam48f11.s1@309,c,62 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |