WormBase Tree Display for Variation: WBVar00247481
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| WBVar00247481 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00247481 | |||
| Other_name | snp_Y51A2B[2] | ||||
| cewivar00703599 | |||||
| CE41596:p.Gln617ArgfsTer15 | |||||
| Y51A2B.6.1:c.1848_1849del | |||||
| HGVSg | CHROMOSOME_V:g.18392363_18392364del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y51A2B | |
| Flanking_sequences | tgagacttgagatttgctgaatctt | gctttgtcaatctcctcgagaacaa | |||
| Mapping_target | Y51A2B | ||||
| Type_of_mutation | Deletion | GA | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Analysis | SNP_Wicks | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00013070 | |||
| Transcript | Y51A2B.6.1 | VEP_consequence | frameshift_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y51A2B.6.1:c.1848_1849del | ||||
| HGVSp | CE41596:p.Gln617ArgfsTer15 | ||||
| cDNA_position | 1848-1849 | ||||
| CDS_position | 1848-1849 | ||||
| Protein_position | 616-617 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | gcTCaa/gcaa | ||||
| Amino_acid_change | AQ/AX | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9091 VarD2=GA | ||||
| Enzymes. Bristol-specific: [Hpy188III,HpyCH4VI,HpyF16II,HpyF19III,HpyF22III,HpyF44IV,SmlI]. CB4856-specific [none]. | |||||
| [20040130 db] this Locus was previously named snp_Y51A2B.2 | |||||
| [20040130 db] this Allele was previously named snp_Y51A2B.2 | |||||
| [20090224 db] original Wicks name : Y51A2B:19170..20036@265 Psnp=0.9091 VarD2=GA | |||||
| [20090224 db] original Wicks id : vd50h09.s1@549,-,47 | |||||
| [20090224 db] Snip-SNP | |||||
| Method | SNP_Wicks |
