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WormBase Tree Display for Variation: WBVar00247425

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Name Class

WBVar00247425NamePublic_nameWBVar00247425
Other_namesnp_Y48G8AR[4]
haw113511
cewivar00161607
Y48G8AR.1b.1:c.738+289G>A
Y48G8AR.1a.1:c.738+289G>A
HGVSgCHROMOSOME_I:g.1265981C>T
Sequence_detailsSMapS_parentSequenceY48G8AR
Flanking_sequencesgaagtggaagagttttcctaaagttggccctaacataagctcgatcccaa
Mapping_targetY48G8AR
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01303595
WBVar00533376
StatusLive
AffectsGeneWBGene00001707
TranscriptY48G8AR.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AR.1a.1:c.738+289G>A
Intron_number3/9
Y48G8AR.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AR.1b.1:c.738+289G>A
Intron_number2/8
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.8806 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y48G8AR.4
[20040130 db] this Allele was previously named snp_Y48G8AR.4
[20090224 db] original Wicks name : Y48G8AR:10601..11464@352 Psnp=0.8806 VarS=CT
[20090224 db] original Wicks id : yx32h03.s1@444,t,39
MethodSNP_Wicks