WormBase Tree Display for Variation: WBVar00247425
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WBVar00247425 | Name | Public_name | WBVar00247425 | ||
---|---|---|---|---|---|
Other_name | snp_Y48G8AR[4] | ||||
haw113511 | |||||
cewivar00161607 | |||||
Y48G8AR.1b.1:c.738+289G>A | |||||
Y48G8AR.1a.1:c.738+289G>A | |||||
HGVSg | CHROMOSOME_I:g.1265981C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y48G8AR | |
Flanking_sequences | gaagtggaagagttttcctaaagtt | ggccctaacataagctcgatcccaa | |||
Mapping_target | Y48G8AR | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | AX | ||||
Person | WBPerson4037 | ||||
Analysis | SNP_Wicks | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01303595 | |||
WBVar00533376 | |||||
Status | Live | ||||
Affects | Gene | WBGene00001707 | |||
Transcript | Y48G8AR.1a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AR.1a.1:c.738+289G>A | ||||
Intron_number | 3/9 | ||||
Y48G8AR.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AR.1b.1:c.738+289G>A | ||||
Intron_number | 2/8 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00004703 | |||||
WBPaper00037807 | |||||
Remark | Predicted SNP: Psnp=0.8806 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y48G8AR.4 | |||||
[20040130 db] this Allele was previously named snp_Y48G8AR.4 | |||||
[20090224 db] original Wicks name : Y48G8AR:10601..11464@352 Psnp=0.8806 VarS=CT | |||||
[20090224 db] original Wicks id : yx32h03.s1@444,t,39 | |||||
Method | SNP_Wicks |