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WormBase Tree Display for Variation: WBVar00247420

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Name Class

WBVar00247420EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247420
Other_namesnp_Y48G8AL[3]
Y48G8AL.5c.1:c.182+853A>T
Y48G8AL.5b.1:c.776+853A>T
Y48G8AL.5a.1:c.1376+853A>T
HGVSgCHROMOSOME_I:g.1202913A>T
Sequence_detailsSMapS_parentSequenceY48G8AL
Flanking_sequencesaaaactgaaaagaaccgagatctgaaaaatgcctgaaaaaattggctccgagttaggccacttggggtggtcaaaaacttttgtgacaattgtcaaatgaaagatcatggtgataacttaaattcccaaagtttc
Mapping_targetY48G8AL
Type_of_mutationSubstitutionAT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00021686
TranscriptY48G8AL.5c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.5c.1:c.182+853A>T
Intron_number1/4
Y48G8AL.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.5a.1:c.1376+853A>T
Intron_number5/8
Y48G8AL.5b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48G8AL.5b.1:c.776+853A>T
Intron_number2/4
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8002 VarS=AT
Enzymes. Bristol-specific: [BseGI,BstF5I,BstPZ418I,FokI,HinGUII,Hpy178VI,HpyF67III,HpyF6I,StsI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y48G8AL.3
[20040130 db] this Allele was previously named snp_Y48G8AL.3
[20090224 db] original Wicks name : Y48G8AL:70060..71201@346 Psnp=0.8002 VarS=AT
[20090224 db] original Wicks id : yy49c09.s1@289,t,35
[20090224 db] Snip-SNP
MethodSNP_Wicks