WormBase Tree Display for Variation: WBVar00247420
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WBVar00247420 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247420 | |||
Other_name | snp_Y48G8AL[3] | ||||
Y48G8AL.5c.1:c.182+853A>T | |||||
Y48G8AL.5b.1:c.776+853A>T | |||||
Y48G8AL.5a.1:c.1376+853A>T | |||||
HGVSg | CHROMOSOME_I:g.1202913A>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y48G8AL | |
Flanking_sequences | aaaactgaaaagaaccgagatctgaaaaatgcctgaaaaaattggctccgagttaggccacttggggtggtcaaaaacttttgtgacaattgtcaaatgaaagatcatgg | tgataacttaaattcccaaagtttc | |||
Mapping_target | Y48G8AL | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00021686 | |||
Transcript | Y48G8AL.5c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.5c.1:c.182+853A>T | ||||
Intron_number | 1/4 | ||||
Y48G8AL.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.5a.1:c.1376+853A>T | ||||
Intron_number | 5/8 | ||||
Y48G8AL.5b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48G8AL.5b.1:c.776+853A>T | ||||
Intron_number | 2/4 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8002 VarS=AT | ||||
Enzymes. Bristol-specific: [BseGI,BstF5I,BstPZ418I,FokI,HinGUII,Hpy178VI,HpyF67III,HpyF6I,StsI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y48G8AL.3 | |||||
[20040130 db] this Allele was previously named snp_Y48G8AL.3 | |||||
[20090224 db] original Wicks name : Y48G8AL:70060..71201@346 Psnp=0.8002 VarS=AT | |||||
[20090224 db] original Wicks id : yy49c09.s1@289,t,35 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |