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WormBase Tree Display for Variation: WBVar00247412

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Name Class

WBVar00247412NamePublic_nameWBVar00247412
Other_namesnp_Y48E1B[9]
haw135931
cewivar00188341
Y48E1B.16.1:c.58-47C>T
HGVSgCHROMOSOME_II:g.13590196G>A
Sequence_detailsSMapS_parentSequenceY48E1B
Flanking_sequencescctttaaaaaaatcgattaaaccaggaaaactagctgaaaatatcgcccc
Mapping_targetY48E1B
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
LaboratoryAX
PersonWBPerson4037
AnalysisSNP_Wicks
WGS_De_Bono
WGS_Yanai
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01382277
WBVar00555796
StatusLive
AffectsGeneWBGene00013013
TranscriptY48E1B.16.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48E1B.16.1:c.58-47C>T
Intron_number2/5
ReferenceWBPaper00038208
WBPaper00004703
WBPaper00037807
RemarkPredicted SNP: Psnp=0.8929 VarS=AG
Enzymes. Bristol-specific: [Acc38I,AeuI,AhaI,AorI,ApaORI,ApyI,AseII,Asp1I,Asp2HI,AsuC2I,Atu1I,AtuBI,AtuII,BciBII,BcnI,BinSI,Bme1390I,BsaCI,BsaJI,BsaNI,Bse16I,Bse17I,Bse24I,BseBI,BseDI,BshGI,BsiLI,BsiUI,BsiVI,BsoGI,BsoI,BsoKI,Bsp103I,Bsp317I,Bsp44I,Bsp53I,Bsp548I,Bsp55I,Bsp56I,Bsp73I,Bsp7I,Bsp8I,BspF105I,BspH43I,BspJ67I,BspNI,BspSI,BssECI,BssKI,Bst100I,Bst1I,Bst2I,Bst2UI,Bst38I,Bst7QII,BstGII,BstM6I,BstMZ611I,BstNI,BstOI,BstZ10I,BthDI,BthEI,CbrI,Cdi27I,Cfr11I,Cfr20I,Cfr22I,Cfr24I,Cfr25I,Cfr27I,Cfr28I,Cfr29I,Cfr30I,Cfr31I,Cfr35I,Cfr58I,Cfr5I,CfrS37I,CthII,DsaV,EagKI,EcaII,EciDI,Ecl136I,Ecl137II,Ecl18kI,Ecl1zII,Ecl37kII,Ecl54kI,Ecl57kI,Ecl66I,EclII,EclS39I,Eco121I,Eco128I,Eco137kI,Eco13kI,Eco153I,Eco170I,Eco179I,Eco1831I,Eco190I,Eco193I,Eco200I,Eco206I,Eco207I,Eco21kI,Eco254I,Eco256I,Eco38I,Eco40I,Eco41I,Eco43I,Eco51II,Eco60I,Eco61I,Eco67I,Eco70I,Eco71I,Eco80I,Eco85I,Eco93I,EcoHI,EcoRII,Ese6II,Esp24I,Esp2I,EspHK22I,EspHK30I,EspHK7I,Fsp1604I,HgiS21I,HgiS22I,HhdI,Hin3I,Hpy99IV,HpyF10III,HpyF61II,HpyF67IV,HpyNI,Kox165I,Kpn10I,Kpn13I,Kpn14I,Kpn16I,Kpn2kI,Kpn49kII,KspHK12I,KspHK14I,Lla497I,Mgl14481I,Mlu2300I,MphI,Msp67I,MspR9I,MvaI,NciI,NlaX,Pae181I,PspGI,RshII,Sau16I,Scg2I,ScrFI,SenPI,Sfl2aI,Sfl2bI,SflHK10695I,SflHK10790I,SflHK11086I,SflHK11087I,SflHK11572I,SflHK115731I,SflHK1794I,SflHK2374I,SflHK2731I,SflHK6873I,SflHK7234I,SflHK7462I,SflHK8401I,Sgr20I,SleI,SniI,SslI,SsoII,Ssp2I,SspAI,Sth117I,Sth455I,StyD4I,TaqXI,Tmu1I,TspAI,Uba1114I,Uba1118I,Uba1120I,Uba1121I,Uba1125I,Uba1171I,Uba1181I,Uba1185I,Uba1189I,Uba1193I,Uba11I,Uba1218I,Uba1243I,Uba1280I,Uba1318I,Uba1347I,Uba1370I,Uba1372I,Uba1376I,Uba1378I,Uba1389I,Uba1391I,Uba13I,Uba1401I,Uba1410I,Uba1423I,Uba1424I,Uba1428I,Uba1442I,Uba17I,Uba20I,Uba41I,Uba42I,Uba81I,Uba82I,ZanI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y48E1B.9
[20040130 db] this Allele was previously named snp_Y48E1B.9
[20090224 db] original Wicks name : Y48E1B:65203..66344@615 Psnp=0.8929 VarS=AG
[20090224 db] original Wicks id : vl31c08.s1@476,a,23 eam61b06.s1@531,a,44
[20090224 db] Snip-SNP
MethodSNP_Wicks