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WormBase Tree Display for Variation: WBVar00247402

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Name Class

WBVar00247402EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247402
Other_namesnp_Y48D7A[1]
cewivar00271319
Y48D7A.2.1:c.77-409C>T
Y48D7A.2.2:c.77-409C>T
HGVSgCHROMOSOME_X:g.3013569G>A
Sequence_detailsSMapS_parentSequenceY48D7A
Flanking_sequencescagaacgacagcgtcattttacttgcttcccgcgttggtctagatgggta
Mapping_targetY48D7A
Type_of_mutationSubstitutionGA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00001461
TranscriptY48D7A.2.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48D7A.2.2:c.77-409C>T
Intron_number3/9
Y48D7A.2.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48D7A.2.1:c.77-409C>T
Intron_number2/8
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.8657 VarS=AG
Enzymes. Bristol-specific: [CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y48D7.1
[20040130 db] this Allele was previously named snp_Y48D7.1
[20090224 db] this Variation was previously named snp_Y48D7[1]
[20090224 db] original Wicks name : Y48D7A:6907..7741@427 Psnp=0.8657 VarS=AG
[20090224 db] original Wicks id : vl31a11.s1@330,a,38
[20090224 db] Snip-SNP
MethodSNP_Wicks