WormBase Tree Display for Variation: WBVar00247402
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WBVar00247402 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247402 | |||
Other_name | snp_Y48D7A[1] | ||||
cewivar00271319 | |||||
Y48D7A.2.1:c.77-409C>T | |||||
Y48D7A.2.2:c.77-409C>T | |||||
HGVSg | CHROMOSOME_X:g.3013569G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y48D7A | |
Flanking_sequences | cagaacgacagcgtcattttacttg | cttcccgcgttggtctagatgggta | |||
Mapping_target | Y48D7A | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00001461 | |||
Transcript | Y48D7A.2.2 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48D7A.2.2:c.77-409C>T | ||||
Intron_number | 3/9 | ||||
Y48D7A.2.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48D7A.2.1:c.77-409C>T | ||||
Intron_number | 2/8 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8657 VarS=AG | ||||
Enzymes. Bristol-specific: [CviJI,CviKI,CviLI,CviMI,CviNI,CviOI,CviTI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y48D7.1 | |||||
[20040130 db] this Allele was previously named snp_Y48D7.1 | |||||
[20090224 db] this Variation was previously named snp_Y48D7[1] | |||||
[20090224 db] original Wicks name : Y48D7A:6907..7741@427 Psnp=0.8657 VarS=AG | |||||
[20090224 db] original Wicks id : vl31a11.s1@330,a,38 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |