WormBase Tree Display for Variation: WBVar00247393
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WBVar00247393 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247393 | |||
Other_name | snp_Y48C3A[32] | ||||
cewivar00142439 | |||||
Y48C3A.12c.1:c.555+448A>C | |||||
Y48C3A.12b.1:c.561+448A>C | |||||
Y48C3A.12d.1:c.561+448A>C | |||||
Y48C3A.12a.1:c.555+448A>C | |||||
HGVSg | CHROMOSOME_II:g.13379941A>C | ||||
Sequence_details | SMap | S_parent | Sequence | Y48C3A | |
Flanking_sequences | tgcctgaaaaaattggctccgagtt | gggcaattcggacggccaaaaaatt | |||
Mapping_target | Y48C3A | ||||
Type_of_mutation | Substitution | A | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | SNP_Wicks | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00012994 | |||
Transcript | Y48C3A.12c.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.12c.1:c.555+448A>C | ||||
Intron_number | 3/7 | ||||
Y48C3A.12b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.12b.1:c.561+448A>C | ||||
Intron_number | 3/8 | ||||
Y48C3A.12a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.12a.1:c.555+448A>C | ||||
Intron_number | 4/9 | ||||
Y48C3A.12d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.12d.1:c.561+448A>C | ||||
Intron_number | 3/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9430 VarS=AC | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y48C3.32 | |||||
[20040130 db] this Allele was previously named snp_Y48C3.32 | |||||
[20090224 db] this Variation was previously named snp_Y48C3[32] | |||||
[20090224 db] original Wicks name : Y48C3A:123802..124733@606 Psnp=0.9430 VarS=AC | |||||
[20090224 db] original Wicks id : yy46d02.s1@273,c,62 | |||||
Method | SNP_Wicks |