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WormBase Tree Display for Variation: WBVar00247393

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Name Class

WBVar00247393EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247393
Other_namesnp_Y48C3A[32]
cewivar00142439
Y48C3A.12c.1:c.555+448A>C
Y48C3A.12b.1:c.561+448A>C
Y48C3A.12d.1:c.561+448A>C
Y48C3A.12a.1:c.555+448A>C
HGVSgCHROMOSOME_II:g.13379941A>C
Sequence_detailsSMapS_parentSequenceY48C3A
Flanking_sequencestgcctgaaaaaattggctccgagttgggcaattcggacggccaaaaaatt
Mapping_targetY48C3A
Type_of_mutationSubstitutionAC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00012994
TranscriptY48C3A.12c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.12c.1:c.555+448A>C
Intron_number3/7
Y48C3A.12b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.12b.1:c.561+448A>C
Intron_number3/8
Y48C3A.12a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.12a.1:c.555+448A>C
Intron_number4/9
Y48C3A.12d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.12d.1:c.561+448A>C
Intron_number3/7
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9430 VarS=AC
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y48C3.32
[20040130 db] this Allele was previously named snp_Y48C3.32
[20090224 db] this Variation was previously named snp_Y48C3[32]
[20090224 db] original Wicks name : Y48C3A:123802..124733@606 Psnp=0.9430 VarS=AC
[20090224 db] original Wicks id : yy46d02.s1@273,c,62
MethodSNP_Wicks