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WormBase Tree Display for Variation: WBVar00247368

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Name Class

WBVar00247368EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247368
Other_namesnp_Y48C3A[7]
Y48C3A.5d.1:c.7-966dup
Y48C3A.5b.1:c.142-966dup
Y48C3A.5a.1:c.142-966dup
HGVSgCHROMOSOME_II:g.13277209dup
Sequence_detailsSMapS_parentSequenceY48C3A
Flanking_sequencesaggagtaaaccccccggaaaaaaaactattaacaattccacgcgatgccc
Mapping_targetY48C3A
Type_of_mutationInsertionA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00012989
TranscriptY48C3A.5d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5d.1:c.7-966dup
Intron_number1/9
Y48C3A.5b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5b.1:c.142-966dup
Intron_number1/11
Y48C3A.5a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY48C3A.5a.1:c.142-966dup
Intron_number1/10
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9195 VarI1=A
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y48C3.7
[20040130 db] this Allele was previously named snp_Y48C3.7
[20090224 db] this Variation was previously named snp_Y48C3[7]
[20090224 db] original Wicks name : Y48C3A:21484..21871@192 Psnp=0.9195 VarI1=A
[20090224 db] original Wicks id : hq64h04.s1@149,a,53
MethodSNP_Wicks