WormBase Tree Display for Variation: WBVar00247368
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WBVar00247368 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247368 | |||
Other_name | snp_Y48C3A[7] | ||||
Y48C3A.5d.1:c.7-966dup | |||||
Y48C3A.5b.1:c.142-966dup | |||||
Y48C3A.5a.1:c.142-966dup | |||||
HGVSg | CHROMOSOME_II:g.13277209dup | ||||
Sequence_details | SMap | S_parent | Sequence | Y48C3A | |
Flanking_sequences | aggagtaaaccccccggaaaaaaaa | ctattaacaattccacgcgatgccc | |||
Mapping_target | Y48C3A | ||||
Type_of_mutation | Insertion | A | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00012989 | |||
Transcript | Y48C3A.5d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.5d.1:c.7-966dup | ||||
Intron_number | 1/9 | ||||
Y48C3A.5b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.5b.1:c.142-966dup | ||||
Intron_number | 1/11 | ||||
Y48C3A.5a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y48C3A.5a.1:c.142-966dup | ||||
Intron_number | 1/10 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9195 VarI1=A | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y48C3.7 | |||||
[20040130 db] this Allele was previously named snp_Y48C3.7 | |||||
[20090224 db] this Variation was previously named snp_Y48C3[7] | |||||
[20090224 db] original Wicks name : Y48C3A:21484..21871@192 Psnp=0.9195 VarI1=A | |||||
[20090224 db] original Wicks id : hq64h04.s1@149,a,53 | |||||
Method | SNP_Wicks |