WormBase Tree Display for Variation: WBVar00247312
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| WBVar00247312 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00247312 | |||
| Other_name | snp_Y47D3A[20] | ||||
| T28D6.5e.1:c.357+85_357+86dup | |||||
| T28D6.5d.1:c.357+85_357+86dup | |||||
| T28D6.5g.1:c.357+85_357+86dup | |||||
| T28D6.5f.1:c.357+85_357+86dup | |||||
| T28D6.5a.1:c.291+85_291+86dup | |||||
| T28D6.5b.1:c.291+85_291+86dup | |||||
| T28D6.5c.1:c.291+85_291+86dup | |||||
| T28D6.6a.1:c.206-4641_206-4640insCT | |||||
| HGVSg | CHROMOSOME_III:g.11335751_11335752dup | ||||
| Sequence_details | SMap | S_parent | Sequence | Y47D3A | |
| Flanking_sequences | ttcttgtctgatggaagagagagag | ttttcctagtttcccccaagggagc | |||
| Mapping_target | Y47D3A | ||||
| Type_of_mutation | Insertion | AG | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00012126 | |||
| WBGene00012125 | |||||
| Transcript | T28D6.6a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.6a.1:c.206-4641_206-4640insCT | ||||
| Intron_number | 4/10 | ||||
| T28D6.5c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5c.1:c.291+85_291+86dup | ||||
| Intron_number | 2/11 | ||||
| T28D6.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5a.1:c.291+85_291+86dup | ||||
| Intron_number | 2/11 | ||||
| T28D6.5b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5b.1:c.291+85_291+86dup | ||||
| Intron_number | 2/12 | ||||
| T28D6.5e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5e.1:c.357+85_357+86dup | ||||
| Intron_number | 2/10 | ||||
| T28D6.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5d.1:c.357+85_357+86dup | ||||
| Intron_number | 2/10 | ||||
| T28D6.5f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5f.1:c.357+85_357+86dup | ||||
| Intron_number | 3/13 | ||||
| T28D6.5g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T28D6.5g.1:c.357+85_357+86dup | ||||
| Intron_number | 3/12 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.9055 VarI2=AG | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_Y47D3.20 | |||||
| [20040130 db] this Allele was previously named snp_Y47D3.20 | |||||
| [20090224 db] this Variation was previously named snp_Y47D3[20] | |||||
| [20090224 db] original Wicks name : Y47D3A:199157..199914@445 Psnp=0.9055 VarI2=AG | |||||
| [20090224 db] original Wicks id : vd52a05.s1@390,g,46 | |||||
| Method | SNP_Wicks |
