WormBase Tree Display for Variation: WBVar00247241
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WBVar00247241 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247241 | |||
Other_name | snp_Y45G5AL[1] | ||||
cewivar00698855 | |||||
Y45G5AL.2b.1:c.179-72_179-71del | |||||
Y45G5AL.2a.1:c.179-72_179-71del | |||||
HGVSg | CHROMOSOME_V:g.4139817_4139818del | ||||
Sequence_details | SMap | S_parent | Sequence | Y45G5AL | |
Flanking_sequences | tgcgaaatcagtgcgtctcttctcc | cattttttgtagatctatgtagacc | |||
Mapping_target | Y45G5AL | ||||
Type_of_mutation | Deletion | CG | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00044528 | |||
Transcript | Y45G5AL.2a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y45G5AL.2a.1:c.179-72_179-71del | ||||
Intron_number | 3/11 | ||||
Y45G5AL.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y45G5AL.2b.1:c.179-72_179-71del | ||||
Intron_number | 2/9 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9221 VarD2=CG | ||||
Enzymes. Bristol-specific: [AciI,BstFZ438I,FauI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y45G5AL.1 | |||||
[20040130 db] this Allele was previously named snp_Y45G5AL.1 | |||||
[20090224 db] original Wicks name : Y45G5AL:1..632@435 Psnp=0.9221 VarD2=CG | |||||
[20090224 db] original Wicks id : yy60f01.s1@138,-,59 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |