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WormBase Tree Display for Variation: WBVar00247241

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Name Class

WBVar00247241EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247241
Other_namesnp_Y45G5AL[1]
cewivar00698855
Y45G5AL.2b.1:c.179-72_179-71del
Y45G5AL.2a.1:c.179-72_179-71del
HGVSgCHROMOSOME_V:g.4139817_4139818del
Sequence_detailsSMapS_parentSequenceY45G5AL
Flanking_sequencestgcgaaatcagtgcgtctcttctcccattttttgtagatctatgtagacc
Mapping_targetY45G5AL
Type_of_mutationDeletionCG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisMillion_mutation_project_reanalysis
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00044528
TranscriptY45G5AL.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY45G5AL.2a.1:c.179-72_179-71del
Intron_number3/11
Y45G5AL.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY45G5AL.2b.1:c.179-72_179-71del
Intron_number2/9
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9221 VarD2=CG
Enzymes. Bristol-specific: [AciI,BstFZ438I,FauI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y45G5AL.1
[20040130 db] this Allele was previously named snp_Y45G5AL.1
[20090224 db] original Wicks name : Y45G5AL:1..632@435 Psnp=0.9221 VarD2=CG
[20090224 db] original Wicks id : yy60f01.s1@138,-,59
[20090224 db] Snip-SNP
MethodSNP_Wicks