WormBase Tree Display for Variation: WBVar00247185
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| WBVar00247185 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00247185 | |||
| Other_name | snp_Y43F8B[3] | ||||
| Y43F8B.1b.3:c.*154_*161del | |||||
| Y43F8B.1b.1:c.*154_*161del | |||||
| Y43F8B.1c.1:c.*278_*285del | |||||
| Y43F8B.1b.2:c.*154_*161del | |||||
| Y43F8B.1a.2:c.*890_*897del | |||||
| Y43F8B.1a.3:c.*278_*285del | |||||
| Y43F8B.1a.1:c.*278_*285del | |||||
| HGVSg | CHROMOSOME_V:g.19534950_19534957del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y43F8B | |
| Flanking_sequences | ggacacatacgcataaatcaaaaaa | aaattatggaaattgaaatttttcg | |||
| Mapping_target | Y43F8B | ||||
| Type_of_mutation | Deletion | TCAAAAAA | |||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
| Analysis | SNP_Wicks | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00012812 | |||
| Transcript | Y43F8B.1a.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.1a.1:c.*278_*285del | ||||
| cDNA_position | 1247-1254 | ||||
| Exon_number | 12/12 | ||||
| Y43F8B.1b.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.1b.2:c.*154_*161del | ||||
| cDNA_position | 2206-2213 | ||||
| Exon_number | 15/15 | ||||
| Y43F8B.1a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.1a.2:c.*890_*897del | ||||
| cDNA_position | 2973-2980 | ||||
| Exon_number | 15/15 | ||||
| Y43F8B.1c.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.1c.1:c.*278_*285del | ||||
| cDNA_position | 1066-1073 | ||||
| Exon_number | 11/11 | ||||
| Y43F8B.1b.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.1b.3:c.*154_*161del | ||||
| cDNA_position | 1134-1141 | ||||
| Exon_number | 12/12 | ||||
| Y43F8B.1b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.1b.1:c.*154_*161del | ||||
| cDNA_position | 2244-2251 | ||||
| Exon_number | 16/16 | ||||
| Y43F8B.1a.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y43F8B.1a.3:c.*278_*285del | ||||
| cDNA_position | 2354-2361 | ||||
| Exon_number | 16/16 | ||||
| Reference | WBPaper00004703 | ||||
| Remark | Predicted SNP: Psnp=0.4689 VarD8=TCAAAAAA | ||||
| Enzymes. SNP detectable only by sequencing. | |||||
| [20040130 db] this Locus was previously named snp_Y43F8B.3 | |||||
| [20040130 db] this Allele was previously named snp_Y43F8B.3 | |||||
| [20090224 db] original Wicks name : Y43F8B:82941..83866@292 Psnp=0.4689 VarD8=TCAAAAAA | |||||
| [20090224 db] original Wicks id : eam55h02.s1@211,-,29 | |||||
| Method | SNP_Wicks |
