WormBase Tree Display for Variation: WBVar00247184
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WBVar00247184 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247184 | |||
Other_name | snp_Y43F8B[2] | ||||
cewivar00263757 | |||||
Y43F8B.2a.1:c.381-1135C>T | |||||
Y43F8B.2d.1:c.318-1135C>T | |||||
HGVSg | CHROMOSOME_V:g.19522981G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y43F8B | |
Flanking_sequences | aattagagaaatggagggtggacta | gagggtggggaggttgttgtggtga | |||
Mapping_target | Y43F8B | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00012813 | |||
Transcript | Y43F8B.2d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y43F8B.2d.1:c.318-1135C>T | ||||
Intron_number | 3/5 | ||||
Y43F8B.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y43F8B.2a.1:c.381-1135C>T | ||||
Intron_number | 4/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9391 VarS=AG | ||||
Enzymes. Bristol-specific: [BfaI,FgoI,FisI,MaeI,MjaI,MthFI,MthZI,Rma485I,Rma486I,Rma490I,Rma495I,Rma496I,Rma497I,Rma500I,Rma501I,Rma503I,Rma506I,Rma509I,Rma510I,Rma515I,Rma516I,Rma517I,Rma518I,Rma519I,Rma522I,RmaI,XspI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y43F8B.2 | |||||
[20040130 db] this Allele was previously named snp_Y43F8B.2 | |||||
[20090224 db] original Wicks name : Y43F8B:70713..71648@544 Psnp=0.9391 VarS=AG | |||||
[20090224 db] original Wicks id : yw10d04.s1@328,a,51 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |