WormBase Tree Display for Variation: WBVar00247123

WBVar00247123 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00247123
    Other_name: snp_Y41C4A[7]
      Y41C4A.4a.1:c.150-504C>A
      Y41C4A.4g.1:c.468-504C>A
      Y41C4A.4c.1:c.117-504C>A
      Y41C4A.4b.1:c.150-504C>A
      Y41C4A.4e.1:c.93-504C>A
      Y41C4A.4d.1:c.168-504C>A
    HGVSg: CHROMOSOME_III:g.11684706C>A
  Sequence_details: SMap: S_parent: Sequence: Y41C4A
    Flanking_sequences: atcgaaaaataaagaatttgaaatttcagcgttttttaaaggcgcataggcgaaaaacgcaaaatttagcagctgagtattattcaacccattatattcaacccagggatgggctacaaaggattttttttccggaaaatcggcaacttgccggaattgaaatttctggcaaaacggcacattgtcggaatttaaatttgtggaaaatcggca attgccggaatttaaatttgtggaa
    Mapping_target: Y41C4A
    Type_of_mutation: Substitution: C A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00000793
    Transcript: Y41C4A.4e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y41C4A.4e.1:c.93-504C>A
        Intron_number: 3/8
      Y41C4A.4g.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y41C4A.4g.1:c.468-504C>A
        Intron_number: 1/6
      Y41C4A.4b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y41C4A.4b.1:c.150-504C>A
        Intron_number: 2/6
      Y41C4A.4a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y41C4A.4a.1:c.150-504C>A
        Intron_number: 3/8
      Y41C4A.4d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y41C4A.4d.1:c.168-504C>A
        Intron_number: 3/8
      Y41C4A.4c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: Y41C4A.4c.1:c.117-504C>A
        Intron_number: 2/6
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.9173 VarS=AC
    Enzymes. Bristol-specific: [Bse3DI,BseMI,BsrDI,TspRI]. CB4856-specific [none].
    [20040130 db] this Locus was previously named snp_Y41C4.7
    [20040130 db] this Allele was previously named snp_Y41C4.7
    [20090224 db] this Variation was previously named snp_Y41C4[7]
    [20090224 db] original Wicks name : Y41C4A:46218..47262@542 Psnp=0.9173 VarS=AC
    [20090224 db] original Wicks id : yy56f03.s1@478,a,43
    [20090224 db] Snip-SNP
  Method: SNP_Wicks