WormBase Tree Display for Variation: WBVar00247122
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WBVar00247122 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247122 | |||
Other_name | snp_Y41C4A[6] | ||||
Y41C4A.4c.1:c.117-587dup | |||||
Y41C4A.4e.1:c.93-587dup | |||||
Y41C4A.4g.1:c.468-587dup | |||||
Y41C4A.4d.1:c.168-587dup | |||||
Y41C4A.4b.1:c.150-587dup | |||||
Y41C4A.4a.1:c.150-587dup | |||||
HGVSg | CHROMOSOME_III:g.11684623dup | ||||
Sequence_details | SMap | S_parent | Sequence | Y41C4A | |
Flanking_sequences | ggatgggctacaaaggatttttttt | ccggaaaatcggcaacttgccggaa | |||
Mapping_target | Y41C4A | ||||
Type_of_mutation | Insertion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00000793 | |||
Transcript | Y41C4A.4e.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y41C4A.4e.1:c.93-587dup | ||||
Intron_number | 3/8 | ||||
Y41C4A.4g.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y41C4A.4g.1:c.468-587dup | ||||
Intron_number | 1/6 | ||||
Y41C4A.4b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y41C4A.4b.1:c.150-587dup | ||||
Intron_number | 2/6 | ||||
Y41C4A.4a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y41C4A.4a.1:c.150-587dup | ||||
Intron_number | 3/8 | ||||
Y41C4A.4d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y41C4A.4d.1:c.168-587dup | ||||
Intron_number | 3/8 | ||||
Y41C4A.4c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y41C4A.4c.1:c.117-587dup | ||||
Intron_number | 2/6 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.8415 VarI1=T | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y41C4.6 | |||||
[20040130 db] this Allele was previously named snp_Y41C4.6 | |||||
[20090224 db] this Variation was previously named snp_Y41C4[6] | |||||
[20090224 db] original Wicks name : Y41C4A:46218..47262@459 Psnp=0.8415 VarI1=T | |||||
[20090224 db] original Wicks id : yy56f03.s1@395,t,39 | |||||
Method | SNP_Wicks |