WormBase Tree Display for Variation: WBVar00247057
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WBVar00247057 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00247057 | |||
Other_name | snp_Y39B6A[24] | ||||
cewivar00113502 | |||||
Y39B6A.2a.1:c.1407+736C>T | |||||
Y39B6A.2b.1:c.270+736C>T | |||||
HGVSg | CHROMOSOME_V:g.19197887C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y39B6A | |
Flanking_sequences | aagctgtgaaaaacgaaagaaaacaggcggaaaacaaagcaagataaatggccgctgaaa | ttgtcggcccctcggccatggcctagaaaccacttttcctcgtccctcgtgaggaaaaagttgcagtgaaaaaat | |||
Mapping_target | Y39B6A | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (26) | |||||
Analysis | SNP_Wicks | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00012665 | |||
Transcript | Y39B6A.2a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y39B6A.2a.1:c.1407+736C>T | ||||
Intron_number | 8/9 | ||||
Y39B6A.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y39B6A.2b.1:c.270+736C>T | ||||
Intron_number | 2/2 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9328 VarS=CT | ||||
Enzymes. SNP detectable only by sequencing. | |||||
[20040130 db] this Locus was previously named snp_Y39B6.24 | |||||
[20040130 db] this Allele was previously named snp_Y39B6.24 | |||||
[20090224 db] this Variation was previously named snp_Y39B6[24] | |||||
[20090224 db] original Wicks name : Y39B6A:239618..240526@214 Psnp=0.9328 VarS=CT | |||||
[20090224 db] original Wicks id : vl30h04.s1@143,t,47 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |