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WormBase Tree Display for Variation: WBVar00247057

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Name Class

WBVar00247057EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00247057
Other_namesnp_Y39B6A[24]
cewivar00113502
Y39B6A.2a.1:c.1407+736C>T
Y39B6A.2b.1:c.270+736C>T
HGVSgCHROMOSOME_V:g.19197887C>T
Sequence_detailsSMapS_parentSequenceY39B6A
Flanking_sequencesaagctgtgaaaaacgaaagaaaacaggcggaaaacaaagcaagataaatggccgctgaaattgtcggcccctcggccatggcctagaaaccacttttcctcgtccctcgtgaggaaaaagttgcagtgaaaaaat
Mapping_targetY39B6A
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
Strain (26)
AnalysisSNP_Wicks
Million_mutation_project_reanalysis
StatusLive
AffectsGeneWBGene00012665
TranscriptY39B6A.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39B6A.2a.1:c.1407+736C>T
Intron_number8/9
Y39B6A.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY39B6A.2b.1:c.270+736C>T
Intron_number2/2
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9328 VarS=CT
Enzymes. SNP detectable only by sequencing.
[20040130 db] this Locus was previously named snp_Y39B6.24
[20040130 db] this Allele was previously named snp_Y39B6.24
[20090224 db] this Variation was previously named snp_Y39B6[24]
[20090224 db] original Wicks name : Y39B6A:239618..240526@214 Psnp=0.9328 VarS=CT
[20090224 db] original Wicks id : vl30h04.s1@143,t,47
[20090224 db] Snip-SNP
MethodSNP_Wicks