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WormBase Tree Display for Variation: WBVar00246962

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Name Class

WBVar00246962EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246962
Other_namesnp_Y38C1BA[3]
Y38C1BA.2b.1:c.201-2515G>A
Y38C1BA.2a.3:c.-20+78G>A
Y38C1BA.2a.2:c.-19-2515G>A
Y38C1BA.2a.1:c.-19-2515G>A
HGVSgCHROMOSOME_IV:g.1811027C>T
Sequence_detailsSMapS_parentSequenceY38C1BA
Flanking_sequencesaaaaaatctttttctacaagaatttaccctaaaaccaaagatttctcaaa
Mapping_targetY38C1BA
Type_of_mutationSubstitutionCT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00004913
TranscriptY38C1BA.2a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY38C1BA.2a.1:c.-19-2515G>A
Intron_number2/8
Y38C1BA.2a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY38C1BA.2a.3:c.-20+78G>A
Intron_number1/7
Y38C1BA.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY38C1BA.2b.1:c.201-2515G>A
Intron_number3/7
Y38C1BA.2a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY38C1BA.2a.2:c.-19-2515G>A
Intron_number1/7
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9328 VarS=CT
Enzymes. Bristol-specific: [AsuHPI,HphI,NgoBVIII,NgoDVIII,NgoJVIII,NgoMVIII,SspD5I]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y38C1B.3
[20040130 db] this Allele was previously named snp_Y38C1B.3
[20090224 db] this Variation was previously named snp_Y38C1B[3]
[20090224 db] original Wicks name : Y38C1BA:24639..25677@125 Psnp=0.9328 VarS=CT
[20090224 db] original Wicks id : yy41h12.s1@60,t,47
[20090224 db] Snip-SNP
MethodSNP_Wicks