WormBase Tree Display for Variation: WBVar00246962
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WBVar00246962 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246962 | |||
Other_name | snp_Y38C1BA[3] | ||||
Y38C1BA.2b.1:c.201-2515G>A | |||||
Y38C1BA.2a.3:c.-20+78G>A | |||||
Y38C1BA.2a.2:c.-19-2515G>A | |||||
Y38C1BA.2a.1:c.-19-2515G>A | |||||
HGVSg | CHROMOSOME_IV:g.1811027C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y38C1BA | |
Flanking_sequences | aaaaaatctttttctacaagaattt | accctaaaaccaaagatttctcaaa | |||
Mapping_target | Y38C1BA | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00004913 | |||
Transcript | Y38C1BA.2a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y38C1BA.2a.1:c.-19-2515G>A | ||||
Intron_number | 2/8 | ||||
Y38C1BA.2a.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38C1BA.2a.3:c.-20+78G>A | ||||
Intron_number | 1/7 | ||||
Y38C1BA.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38C1BA.2b.1:c.201-2515G>A | ||||
Intron_number | 3/7 | ||||
Y38C1BA.2a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38C1BA.2a.2:c.-19-2515G>A | ||||
Intron_number | 1/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9328 VarS=CT | ||||
Enzymes. Bristol-specific: [AsuHPI,HphI,NgoBVIII,NgoDVIII,NgoJVIII,NgoMVIII,SspD5I]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y38C1B.3 | |||||
[20040130 db] this Allele was previously named snp_Y38C1B.3 | |||||
[20090224 db] this Variation was previously named snp_Y38C1B[3] | |||||
[20090224 db] original Wicks name : Y38C1BA:24639..25677@125 Psnp=0.9328 VarS=CT | |||||
[20090224 db] original Wicks id : yy41h12.s1@60,t,47 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |