WormBase Tree Display for Variation: WBVar00246954
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WBVar00246954 | Evidence | Paper_evidence | WBPaper00004703 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00246954 | |||
Other_name | snp_Y37H2A[3] | ||||
Y37H2A.1b.1:c.584+259del | |||||
Y37H2A.1a.1:c.809+259del | |||||
HGVSg | CHROMOSOME_V:g.18111915del | ||||
Sequence_details | SMap | S_parent | Sequence | Y37H2A | |
Flanking_sequences | atgtacagaaaatgcaccttgaaat | aaaaaaaaatcaattttttcctcct | |||
Mapping_target | Y37H2A | ||||
Type_of_mutation | Deletion | T | |||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | SNP_Wicks | ||
Analysis | SNP_Wicks | ||||
Status | Live | ||||
Affects | Gene | WBGene00305698 | |||
WBGene00012562 | |||||
Transcript | Y37H2A.20 | ||||
Y37H2A.1b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y37H2A.1b.1:c.584+259del | ||||
Intron_number | 2/4 | ||||
Y37H2A.1a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y37H2A.1a.1:c.809+259del | ||||
Intron_number | 4/7 | ||||
Reference | WBPaper00004703 | ||||
Remark | Predicted SNP: Psnp=0.9226 VarD1=T | ||||
Enzymes. Bristol-specific: [MluCI,MseI,Sse9I,TasI,Tru1I,Tru9I,TseCI,Tsp509I,TspEI]. CB4856-specific [none]. | |||||
[20040130 db] this Locus was previously named snp_Y37H2.3 | |||||
[20040130 db] this Allele was previously named snp_Y37H2.3 | |||||
[20090224 db] this Variation was previously named snp_Y37H2[3] | |||||
[20090224 db] original Wicks name : Y37H2A:7346..7947@453 Psnp=0.9226 VarD1=T | |||||
[20090224 db] original Wicks id : hz76d01.s1@100,-,62 | |||||
[20090224 db] Snip-SNP | |||||
Method | SNP_Wicks |