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WormBase Tree Display for Variation: WBVar00246954

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Name Class

WBVar00246954EvidencePaper_evidenceWBPaper00004703
NamePublic_nameWBVar00246954
Other_namesnp_Y37H2A[3]
Y37H2A.1b.1:c.584+259del
Y37H2A.1a.1:c.809+259del
HGVSgCHROMOSOME_V:g.18111915del
Sequence_detailsSMapS_parentSequenceY37H2A
Flanking_sequencesatgtacagaaaatgcaccttgaaataaaaaaaaatcaattttttcctcct
Mapping_targetY37H2A
Type_of_mutationDeletionT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004602From_analysisSNP_Wicks
AnalysisSNP_Wicks
StatusLive
AffectsGeneWBGene00305698
WBGene00012562
TranscriptY37H2A.20
Y37H2A.1b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY37H2A.1b.1:c.584+259del
Intron_number2/4
Y37H2A.1a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY37H2A.1a.1:c.809+259del
Intron_number4/7
ReferenceWBPaper00004703
RemarkPredicted SNP: Psnp=0.9226 VarD1=T
Enzymes. Bristol-specific: [MluCI,MseI,Sse9I,TasI,Tru1I,Tru9I,TseCI,Tsp509I,TspEI]. CB4856-specific [none].
[20040130 db] this Locus was previously named snp_Y37H2.3
[20040130 db] this Allele was previously named snp_Y37H2.3
[20090224 db] this Variation was previously named snp_Y37H2[3]
[20090224 db] original Wicks name : Y37H2A:7346..7947@453 Psnp=0.9226 VarD1=T
[20090224 db] original Wicks id : hz76d01.s1@100,-,62
[20090224 db] Snip-SNP
MethodSNP_Wicks