WormBase Tree Display for Variation: WBVar00246885

WBVar00246885 Evidence: Paper_evidence: WBPaper00004703
  Name: Public_name: WBVar00246885
    Other_name: snp_Y27F2A[6]
      CE33727:p.Gly18=
      Y27F2A.2.1:c.54C>G
    HGVSg: CHROMOSOME_II:g.3185211C>G
  Sequence_details: SMap: S_parent: Sequence: Y27F2A
    Flanking_sequences: tcatctactatcttcatggaatcgg acaatttccctgctcttcgacgctt
    Mapping_target: Y27F2A
    Type_of_mutation: Substitution: C G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004602 From_analysis: SNP_Wicks
    Analysis: SNP_Wicks
    Status: Live
  Affects: Gene: WBGene00005590
    Transcript: Y27F2A.2.1 VEP_consequence: synonymous_variant
        VEP_impact: LOW
        HGVSc: Y27F2A.2.1:c.54C>G
        HGVSp: CE33727:p.Gly18=
        cDNA_position: 54
        CDS_position: 54
        Protein_position: 18
        Exon_number: 1/6
        Codon_change: ggC/ggG
        Amino_acid_change: G
  Reference: WBPaper00004703
  Remark: Predicted SNP: Psnp=0.5508 VarS=CG
    Enzymes. SNP detectable only by sequencing.
    [20040130 db] this Locus was previously named snp_Y27F2.6
    [20040130 db] this Allele was previously named snp_Y27F2.6
    [20090224 db] this Variation was previously named snp_Y27F2[6]
    [20090224 db] original Wicks name : Y27F2A:30563..31706@746 Psnp=0.5508 VarS=CG
    [20090224 db] original Wicks id : yw17h10.s1@340,g,29
    [20090224 db] Snip-SNP
  Method: SNP_Wicks